BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0015.p
         (451 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526...   806   0.0  
gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941...   660   0.0  

>gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/398 (96%), Positives = 394/398 (98%)

Query: 54  WSYGKLRRDFFKYKDEKKTETIDASNVDKYASKLSAGQVALIKQIKGYKMDVYPSHRYCS 113
           WSYGKLRRDFFKYKD+KK+ETIDASNVDKYASKLSAGQ+ALIKQIKGYKMDVYPSHRYCS
Sbjct: 56  WSYGKLRRDFFKYKDDKKSETIDASNVDKYASKLSAGQIALIKQIKGYKMDVYPSHRYCS 115

Query: 114 APDFVVENTKKNTSAKLGADGWSLAEAVVPGIPFPVPKSGEEVMYNSKMRYRGVAQEWKS 173
           APDFVV+NTKKNTSAKLGADGWSLAEAVVPGIPFP+PKSGEEVMYNSKMRYRGVAQEWKS
Sbjct: 116 APDFVVDNTKKNTSAKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVAQEWKS 175

Query: 174 TITAVSPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQAL 233
           TITAVSPRKG SEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQAL
Sbjct: 176 TITAVSPRKGGSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQAL 235

Query: 234 SLTTFLNQAGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWK 293
           SLTTFLNQ GGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWK
Sbjct: 236 SLTTFLNQPGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWK 295

Query: 294 LVGKKEMYVPYGSFGATDFKAKFEDVAGDESIAESARRYELHRVWVVEATVKAGVRHLAP 353
           LVGKKEMYVPYGSFGATDFKAKFEDVAG+E IAE+ARRYELHRVWVVEATVKAGVRHLAP
Sbjct: 296 LVGKKEMYVPYGSFGATDFKAKFEDVAGEEYIAENARRYELHRVWVVEATVKAGVRHLAP 355

Query: 354 KRTFYVDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETGSCDQAGFAQYNLAEGRYVFD 413
           KRTFYVDEDSWNLVAADDYDAQGKLWKHREAY+IPVYETGSCDQAGF QYNLAEGRYVFD
Sbjct: 356 KRTFYVDEDSWNLVAADDYDAQGKLWKHREAYIIPVYETGSCDQAGFTQYNLAEGRYVFD 415

Query: 414 LHAAGTGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 451
           LH+AGTGKDMAWEVDGKGNPRAKASFYSADNLRAISDR
Sbjct: 416 LHSAGTGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 453


>gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941
           [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/399 (76%), Positives = 352/399 (88%), Gaps = 1/399 (0%)

Query: 54  WSYGKLRRDFFKYKDEKKTETIDASNVDKYASKLSAGQVALIKQIKGYKMDVYPSHRYCS 113
           WSYGKLR+D+FKYKDEK TE IDASNVDKYA  L+ GQVALIKQ+KGYKMD+YP+HRYC+
Sbjct: 56  WSYGKLRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCA 115

Query: 114 APDFVVENTKKNTS-AKLGADGWSLAEAVVPGIPFPVPKSGEEVMYNSKMRYRGVAQEWK 172
           APDFVVENTKKN +  K+GADGWSLAEA VPGIPFP+PK+G EVMYNSKMRYRG+  ++ 
Sbjct: 116 APDFVVENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGLGVDFP 175

Query: 173 STITAVSPRKGSSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNSPTALAGQA 232
           +TITAVSPRKGS+EWIKA  Q T+F+P   KGS  LSTL  VE+YTY AY+SPTALAGQA
Sbjct: 176 NTITAVSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYSSPTALAGQA 235

Query: 233 LSLTTFLNQAGGETFYYFPGQRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDW 292
           L++TT+LN+ G ETFYYFPGQRRVRRMPSYAYD+PQIGMENQYT+DEP VFNGT+DRFDW
Sbjct: 236 LTVTTYLNRPGAETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDW 295

Query: 293 KLVGKKEMYVPYGSFGATDFKAKFEDVAGDESIAESARRYELHRVWVVEATVKAGVRHLA 352
           KLVGKKE+Y+ Y SFGA +FKA F+D+A  + +AE+ARRYELHRVWVVEATVK GVRHLA
Sbjct: 296 KLVGKKEIYIAYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLA 355

Query: 353 PKRTFYVDEDSWNLVAADDYDAQGKLWKHREAYVIPVYETGSCDQAGFAQYNLAEGRYVF 412
           PKRTFYVDEDSWNLV +DDYDAQ KLWKHRE Y+IPVYETG+CD +GFAQYNLAEGRY+ 
Sbjct: 356 PKRTFYVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACDLSGFAQYNLAEGRYLM 415

Query: 413 DLHAAGTGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 451
           D H+AGTGKD+ WE + K NPR + +FYSADNLRAISDR
Sbjct: 416 DSHSAGTGKDIRWETEAKDNPRLRDNFYSADNLRAISDR 454


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,463,713
Number of extensions: 61573
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,203,190
Effective search space: 436757970
Effective search space used: 436757970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)