BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0014.p (328 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 597 e-172 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 144 1e-35 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 92 7e-20 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 87 3e-18 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 86 4e-18 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 597 bits (1538), Expect = e-172, Method: Compositional matrix adjust. Identities = 286/331 (86%), Positives = 305/331 (92%), Gaps = 3/331 (0%) Query: 1 MHADHFSVHAEQFSDVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTA 60 MH+DHFSVHA QFSDVD+QAS LTGWEQEYQQLGSGRF GAL MVQT++FCFIRE TNTA Sbjct: 1 MHSDHFSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTA 60 Query: 61 LHERIVPPPEQMVIGICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISV 120 LHER+VPPP QMVIGICN+S RGHLLNGRPL QDQLIVLDGSRAHHIRT GPIEL+GIS+ Sbjct: 61 LHERMVPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISM 120 Query: 121 QRELFLSQLHEQDEASVRKWLDLSVLQLDAATAGMLRHYFSVAFDLLNTPAGKATRPISP 180 QR+LFLSQLHEQD+ASVRKWLDLSVLQLD ATAGMLRHYFS+AFDLLNT GK PISP Sbjct: 121 QRDLFLSQLHEQDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISP 180 Query: 181 RALASTAISNVALALSLNQGHHELESTLPSRQRRERIVQNAIDYMRTHAGEEIGILDVCR 240 RALAST ISNVALALSLN G ++LESTLPSRQRRERIVQNAIDYMR HAGEEIGILDVCR Sbjct: 181 RALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCR 240 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRSGEERGHD---TIGNLAALC 297 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRR+GE+R HD TIGNLAALC Sbjct: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALC 300 Query: 298 GFNHPSRFASEYKKMFGVLPSETVIKTAAQS 328 GFNHPSRFASEYKKMFGVLPSETV++ + + Sbjct: 301 GFNHPSRFASEYKKMFGVLPSETVLRAVSDA 331 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 7/304 (2%) Query: 15 DVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQMVI 74 DVD+ A LT WEQ Y Q+ G F G L Q+D RE ++ A+ + P+ Sbjct: 27 DVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYWF 86 Query: 75 GICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFLSQLHEQDE 134 GI G +NGR + +D ++ G+ + T E+ GI VQR+ Q Sbjct: 87 GI-EARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDAL--QASAARL 143 Query: 135 ASVRKWLDLSVLQLDAATAGMLRHYFSVAFDLLNTPAGKATRPISPRALASTAISNVALA 194 W L +L G L LL AG+A+ + L A+ VAL Sbjct: 144 GCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAM-AGQASGAHAALQLRQEAVL-VALL 201 Query: 195 LSLNQGHHELESTLPSRQRRERIVQNAIDYMRTHAGEEIGILDVCRATHVSRRTLQYCFE 254 L++G E E+ S RR RIV +A ++ H + + +C A HVSRRTLQYCFE Sbjct: 202 AMLDEGEIEAEAG-ASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQYCFE 260 Query: 255 ERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCGFNHPSRFASEYKKMFG 314 + L +SP+ YL++LRLN R + G + +IG++AA GF + S+F+ +YKK+FG Sbjct: 261 DVLGMSPMSYLRSLRLNGVRRALCHGDGRQ-AVGSIGDIAAAWGFANFSQFSCDYKKLFG 319 Query: 315 VLPS 318 PS Sbjct: 320 QTPS 323 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 15/322 (4%) Query: 7 SVHAEQFSDVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIV 66 S+H +F DV A+ + W+Q Y Q+ +G+ +L + T RE N + + Sbjct: 4 SIH--RFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGE 61 Query: 67 PPPEQMVIGICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFL 126 P +Q+ + + GR ++ L G +LL ++ R+LF Sbjct: 62 APRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFE 121 Query: 127 SQLHEQ-DEASVRKWLDLSVLQLDA----ATAGMLRHYFSVAFDLLNTPAGKATRPISPR 181 LH+ D + L V+++ A L FS A + +A P S + Sbjct: 122 EHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMP-SVQ 180 Query: 182 ALASTAISNVALALSLNQGHHELESTLPSRQR---RERIVQNAIDYMRTHAGEEIGILDV 238 L +L L + P RQ R IV+ A I +V Sbjct: 181 TLQREQALESSLLGELLGLLCAPDCD-PVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEV 239 Query: 239 CRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCG 298 C+ VSRRT+Q F+ + +PL YL+ +RLN RE+ + +E +IG++A+ G Sbjct: 240 CQRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQE---ASIGDIASRWG 296 Query: 299 FNHPSRFASEYKKMFGVLPSET 320 F H S FA +Y+ +FG LPS+T Sbjct: 297 FFHLSHFAEDYQALFGELPSQT 318 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/323 (29%), Positives = 146/323 (45%), Gaps = 29/323 (8%) Query: 16 VDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQMVIG 75 +D+ +L + + Q+ G+ +L+M Q RE ++ L +R V P +V Sbjct: 28 LDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRGVNWPGSLVFS 87 Query: 76 ICNTSARGH-LLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFLSQLHE--- 131 ARG L+GR + +V DG I T ++L+ I V R+ ++ + Sbjct: 88 FV-VQARGRGWLSGRAVDPQASLVADGEALPEIITPAELDLVFIVVDRQWLSERIGDGAS 146 Query: 132 -QDEASVRKWLDLSVLQLDAATAGMLRHYFSVAFDLLNTPA--GKATRPISPRALASTAI 188 Q S R DL A +LR F LL A G+ + I ALA + Sbjct: 147 RQIAGSAR---DLRCFAAWHEHALVLRRLFP----LLPGQARLGQPSPSIGHCALAPRS- 198 Query: 189 SNVALALSLNQGHHELESTLPSRQRRE--------RIVQNAIDYMRTHAGEEIGILDVCR 240 S +L+ + L L S R E R++ A MR A E + V Sbjct: 199 SAGGGSLAEDMVLEALLDVLGSVHRVEALRETDHKRLIDQARRLMRGDAPERATMTQVAA 258 Query: 241 ATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREI--KRRSGEERGHDTIGNLAALCG 298 VSRR LQ CF + I +++++A RLN + + RR+G E +IG++AA G Sbjct: 259 HLGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEARRAGLEV---SIGDIAADWG 315 Query: 299 FNHPSRFASEYKKMFGVLPSETV 321 F H SRFA++Y+ MFG LPS+T+ Sbjct: 316 FWHLSRFAADYRDMFGELPSKTL 338 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/322 (25%), Positives = 140/322 (43%), Gaps = 18/322 (5%) Query: 12 QFSDVDQQASTLTGWEQEYQQLGSGRFVGALAMVQTDEFCFIRETTNTALHERIVPPPEQ 71 +F DV + A+ ++ W Y Q+ +G+ +L + T RE N + ++ P EQ Sbjct: 7 RFQDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPREQ 66 Query: 72 MVIGICNTSARGHLLNGRPLTQDQLIVLDGSRAHHIRTNGPIELLGISVQRELFLSQL-H 130 + + + GR + + ++ L G +L I+ R LF +QL H Sbjct: 67 VCFAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLEH 126 Query: 131 EQDEASVRKWLDLSVLQ-----LDAATAGMLRHYFSVAFDLLNTPAGKATRPISPRALAS 185 + + V++ L A +L ++ + +L+ G P + L Sbjct: 127 TASPERIVALMKQPVVKVASQDLHACRERLLNIFY---WAMLSIEDGHGQHPQHEQELEL 183 Query: 186 TAISNVALALSL-NQGHHELESTLPSRQRRERIVQNAIDYMRTHAGEEIGILDVCRATHV 244 + ++ + LS + G ST+ R IV A I +VC V Sbjct: 184 SLLAELLALLSAPDCGASRQISTI-----RSYIVDKLHRQTMNDAINVPSIFEVCEQMQV 238 Query: 245 SRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRSGEERGHDTIGNLAALCGFNHPSR 304 SRRT+Q F+ + +P YL+ +RLN R + S E+ TIG++A+ GF H S Sbjct: 239 SRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQ---ITIGDIASRWGFFHLSH 295 Query: 305 FASEYKKMFGVLPSETVIKTAA 326 FA +Y+ +F LPS+T+ ++ A Sbjct: 296 FAEDYRALFCELPSQTIRRSHA 317 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,004,719 Number of extensions: 40510 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 5 Length of query: 328 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 242 Effective length of database: 1,212,660 Effective search space: 293463720 Effective search space used: 293463720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)