BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0011.p (698 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 1158 0.0 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 275 6e-75 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 256 4e-69 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 231 2e-61 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 228 1e-60 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 1158 bits (2996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 570/717 (79%), Positives = 631/717 (88%), Gaps = 28/717 (3%) Query: 1 MNQTDNDSGQAATDSGLLCLILLAKLHGIAADAQQLQHRFGRQPFNVQTILLGARALGMK 60 MN+TD D A DSGL CL+++A+LHGIAADAQQLQHRFGRQPF +QTILL AR LGM Sbjct: 1 MNETDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMT 60 Query: 61 ARCIRQQAARLERTPVPAIGIDHGGRFFVLAKIDSTPQDKNGAATRVLIQRPGQPPQVLT 120 A+C+ QQ RLERTP+PAIGID GRFFVLAK++ Q ++ R+L+Q+PGQ PQVL+ Sbjct: 61 AKCLHQQRERLERTPLPAIGIDRNGRFFVLAKVEQA-QGESAHGQRILVQQPGQAPQVLS 119 Query: 121 RSEFNALWAGQVILMTSQATYAGESSRFDFTWFIPAVVKYRKVLAEVLLISLVLQIIGLV 180 + +F ALW+GQVIL TS+A+YA ESSRFDF+WFIPAVVKYRK LAEVLLISLVLQ+IGL+ Sbjct: 120 QRDFEALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLI 179 Query: 181 TPLFFQVVMDKVLVNHAMMTLNVIAVGLIAATIFEALLTGIRTAIFAKASSKIDVELGAR 240 TP+FFQVVMDKVLVNHAMMTLNVIAVGLIAAT+FEA+LTGIRTAIFA ASSKIDVELG+R Sbjct: 180 TPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSR 239 Query: 241 LFSHLLSLPLAYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDLMFSFIFLGVMLWYS 300 LFSHLLSLPL+YFQVRRAGDSIARVRELENIRSFLTGNAMTLVLD+MFSF+FLGVMLWYS Sbjct: 240 LFSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYS 299 Query: 301 VPLTLIVLASIPVYLLLSLIFTPVLRARLNDKFNKSAENQSFLVETLTGMDTVKALAVEP 360 V L+LIVLASIPVY+LLSL+FTP+LR RLNDKFNKSAENQSFLVETLTGMDTVKA+AVEP Sbjct: 300 VSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEP 359 Query: 361 HWQRKWDQQLAGYVAAGLTTTNISLLANGGVNLVSKLVSVGIMWMGALQVVDNTLTVGEL 420 WQ+KWD+QLA YVAAGLTTTNISLLA+G V LVSKLV+VGIMW+GAL VV N ++VGEL Sbjct: 360 RWQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGEL 419 Query: 421 VAFNMLAGK----------------------DRXSG-----ADHPGQRTRLPRVTGAIAF 453 VAFNMLAG+ R + + G RTRLPRV GAI+F Sbjct: 420 VAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVNGAISF 479 Query: 454 ERVSFRYRPETPEVIRGLTLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRVTVDG 513 + VSFRYRPETPEVIRGL+LQI+PGEVIGIVGRSGSGKSTLAKLVQRLY+CE+GR++VDG Sbjct: 480 DLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDG 539 Query: 514 QDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDSSAPIEQVIAAAKLAGAHDFICE 573 QDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIAL D S PIEQ+I AAKLAGAHDFICE Sbjct: 540 QDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICE 599 Query: 574 LPEGYDTLVGEQGSGLSGGQRQRIAIARALISNPGILIFDEATSALDYESEKIIQDNMRQ 633 LPEGYDT+VGEQGSGLSGGQRQRIAIARALI+NPGILIFDEATSALDYESEKIIQDNMRQ Sbjct: 600 LPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQ 659 Query: 634 ICAGRTVLIIAHRLSAVRDADRIVVMERGSVVESGSHEELLMLPDGIYAHLCALQAG 690 ICAGRTVLIIAHRLSAVRDADRI+VMERG V ESGSH+EL+ LP GIYAHL LQAG Sbjct: 660 ICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAG 716 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 275 bits (704), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 210/565 (37%), Positives = 295/565 (52%), Gaps = 69/565 (12%) Query: 179 LVTPLFFQVVMDKVLV---NHAMMTLNVIAV---GLIAATIFEALLTGIRTAIFAKASSK 232 LV P +MD VL+ N A + ++ + GL+ A + L RT I A S + Sbjct: 197 LVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILALVSER 256 Query: 233 IDVELGARLFSHLLSLPLAYFQVRRAGDSIARV-RELENIRSFLTGNAMTLVLDLMFSFI 291 I +L +SHLL L YF +R GD +AR+ E + I FL+ + + +D++ + Sbjct: 257 IGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIM 316 Query: 292 FLGVMLWYSVPLTLIVLASIPVYLLLSLIFTPVLRARLNDKFNK----SAENQSFLVETL 347 +++ + L L+ L +P + V+R RL F K +E + L +T+ Sbjct: 317 TAAILISINPWLALVTLLPLPFIAWM----IHVVRDRLRHGFEKIDRIWSEVTNVLADTI 372 Query: 348 TGMDTVKALAVEPHWQRKWDQQLAGYVAAGLTTTNISLLANGGVN--------LVSKLVS 399 G+ VKA A E +++A + A +L+ N VN V+ L Sbjct: 373 PGIRVVKAFAQE-------KREVARFREA----NRHNLMVNDRVNKIWSLFTPTVTFLTE 421 Query: 400 VGIM--WM-GALQVVDNTLTVGELVAF----------------------NMLAGK----- 429 VG++ W+ G QV N +TVG L AF AG Sbjct: 422 VGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFD 481 Query: 430 --DRXSGADHPGQRTRLPRVTGAIAFERVSFRYRPETPEVIRGLTLQIQPGEVIGIVGRS 487 D S P L +V GAI + FRY VIR ++L I PGE+IG+VG S Sbjct: 482 ILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHS 539 Query: 488 GSGKSTLAKLVQRLYVCESGRVTVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIA 547 GSGKST+ L+ R Y G + +DG DI + + R+ IG+VLQE LF +I +NIA Sbjct: 540 GSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIA 599 Query: 548 LVDSSAPIEQVIAAAKLAGAHDFICELPEGYDTLVGEQGSGLSGGQRQRIAIARALISNP 607 A E++IAAA+ A AH+FI LP+GYD+LVGE+G LSGG+RQRI+IARAL+ +P Sbjct: 600 YGKPEATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDP 659 Query: 608 GILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIVVMERGSVVES 667 ILI DEATS++D +EK IQ + + GRT + IAHRLS +R ADR+VV++RG VVE Sbjct: 660 RILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEV 719 Query: 668 GSHEELLMLPDGIYAHLCALQAGKP 692 G+HEE LM +G Y L QA P Sbjct: 720 GNHEE-LMAREGHYYKLYQAQARNP 743 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 256 bits (654), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 185/585 (31%), Positives = 312/585 (53%), Gaps = 57/585 (9%) Query: 159 KYRKVLAEVLLISLVLQIIGLVTPLFFQVVMDKVLVN-------HAMMTLNVIAVGLIAA 211 K+R +LA L+ L +G+ PL + ++D + + + ++A G A Sbjct: 36 KWRVLLALAFLVGAKLANVGV--PLVLKRLVDAMTITPTHPQALLVLPLGLLVAYG--AL 91 Query: 212 TIFEALLTGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGD---SIAR-VRE 267 + AL T +R +FA+ + + + ++F HL +L L + R+ G I R R Sbjct: 92 RLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRG 151 Query: 268 LENIRSFLTGNAMTLVLD--LMFSFIFLGVMLWYSVPLTLIVLASIPVYLLLSLIFTPVL 325 + ++ S+ + + +++ L+ +++ +W+SV I ++ Y+L ++ T Sbjct: 152 VSSLVSYTLFSILPTLIEIALVLAYLITHYDVWFSV----ITAGALVCYILFTITVTE-W 206 Query: 326 RARLNDKFNK-SAENQSFLVETLTGMDTVKALAVEPHWQRKWDQQLAGYVAAGLTT-TNI 383 R N+ + + +++L +TVK E R++D+ L Y A + + +++ Sbjct: 207 RTHFRRTMNELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSL 266 Query: 384 SLLANGGVNLVSKLVSVGIMWMGALQVVDNTLTVGELVAFN--------------MLAGK 429 SLL G +++ V++ I+W + V+D ++T+G++V N +L + Sbjct: 267 SLLNTGQSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYRE 325 Query: 430 DRXSGADHPGQRTRLP--------------RVTGA-IAFERVSFRYRPETPEVIRGLTLQ 474 + S AD + L + GA + F+ V F Y +++ + Sbjct: 326 IKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYE-RNRQILFDVDFT 384 Query: 475 IQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRVTVDGQDIAIIDTASLRQQIGVVLQE 534 +Q G +VG SGSGKSTL++L+ R Y ++G + +DGQD+ + ASLRQ IG+V Q+ Sbjct: 385 VQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQD 444 Query: 535 NTLFSRSIRDNIALVDSSAPIEQVIAAAKLAGAHDFICELPEGYDTLVGEQGSGLSGGQR 594 LF+ +I NIA A EQ++AAAK A HDFI LP+GY ++VGE+G LSGG++ Sbjct: 445 TVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEK 504 Query: 595 QRIAIARALISNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAD 654 QR+AIAR L+ +P ILIFDEATSALD +E+ IQ + +I RT L+IAHRLS + +A Sbjct: 505 QRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQ 564 Query: 655 RIVVMERGSVVESGSHEELLMLPDGIYAHL-CALQAGKPLQGETP 698 +I+V++ G +VE G+H LLM G+YA + QAG +G +P Sbjct: 565 QILVLDHGRIVERGTHAGLLM-AGGLYAQMWLRQQAGADEEGGSP 608 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 231 bits (588), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 176/531 (33%), Positives = 284/531 (53%), Gaps = 53/531 (9%) Query: 201 LNVIAVGLIAATIFEALLTGIRTAIFAKASSKIDVELGARLFSHLLSLPLAYFQVRRAGD 260 +N+ + L + T +R + + ++ +L + +++H+++ +F+ + G+ Sbjct: 90 INLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGE 149 Query: 261 SIARVRELENIRSFLTGNAMTLVLDLMFSFIFLGVMLWYSVPLTLIVLASIPVYLLLSLI 320 ++R+ + L G ++++ L FI ML++ T L SI + +L +++ Sbjct: 150 VLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFF----TSARLTSIIIVMLAAVV 205 Query: 321 FTPVLRARLNDKFNKSAENQ-----SFLVETLTGMDTVKALAVEPHWQRKWDQQLAGYVA 375 V R K +++++++ + E L M TV+A E R++ Q V Sbjct: 206 LPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQS----VE 261 Query: 376 AGLTTTNISLLANGGVNLVSKLVSVG----IMWMGALQVVDNTLTVGELVAF----NMLA 427 T + A + +V+ L+ G ++W+GA V++ +++ GEL F +++A Sbjct: 262 RAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVA 321 Query: 428 GK-----------DRXSGADH----------PGQRTRLPRVT-------GAIAFERVSFR 459 G R +GA P Q LP A+ + V F Sbjct: 322 GSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFH 381 Query: 460 Y--RPETPEVIRGLTLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESGRVTVDGQDIA 517 Y RP P + + L+L +QPGE + IVG SG+GK+TL +L+ R Y + G++ +DG DI Sbjct: 382 YPSRPGHPSLTQ-LSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIR 440 Query: 518 IIDTASLRQQIGVVLQENTLFSRSIRDNIALVDSSAPIEQVIAAAKLAGAHDFICELPEG 577 +D +LR IG+V Q+ +FS + +NI A +VIAAA++A AH+FI LP Sbjct: 441 YLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGS 500 Query: 578 YDTLVGEQGSGLSGGQRQRIAIARALISNPGILIFDEATSALDYESEKIIQDNMRQICAG 637 Y +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + G Sbjct: 501 YACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVG 560 Query: 638 RTVLIIAHRLSAVRDADRIVVMERGSVVESGSHEELLMLPDGIYAHLCALQ 688 RT L+IAHRL+ V+ ADRI+V+E G +VESG+H EL+ DG+YA L ALQ Sbjct: 561 RTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVA-RDGLYAGLAALQ 610 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/254 (49%), Positives = 167/254 (65%), Gaps = 7/254 (2%) Query: 449 GAIAFERVSFRYRPETPE-VIRGLTLQIQPGEVIGIVGRSGSGKSTLAKLVQRLYVCESG 507 G + FE VSF Y P V+ L L I+PGE IG+VGRSG+GKST+ L+ R Y E G Sbjct: 358 GELRFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGG 417 Query: 508 RVTVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALVDSSAPIEQVIAAAKLAGA 567 R+T+DGQDIA + SLR QIG+V Q+ +L RS+R+NI A ++ AA+ A A Sbjct: 418 RITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEA 477 Query: 568 HDFICELPE-----GYDTLVGEQGSGLSGGQRQRIAIARALISNPGILIFDEATSALDYE 622 HDFI L + GYD VGE+G LSGGQRQRIAIAR ++ + IL+ DEATSALD E Sbjct: 478 HDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSE 537 Query: 623 SEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIVVMERGSVVESGSHEELLMLPDGIYA 682 E IQ ++ ++ G+TV+ IAHRLS + DR++V+++G +VE GSH ELL +G+YA Sbjct: 538 VEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLA-ANGLYA 596 Query: 683 HLCALQAGKPLQGE 696 L + Q+G L E Sbjct: 597 RLWSHQSGGFLGEE 610 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,040,942 Number of extensions: 83439 Number of successful extensions: 683 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 514 Number of HSP's successfully gapped: 142 Length of query: 698 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 606 Effective length of database: 1,184,250 Effective search space: 717655500 Effective search space used: 717655500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 134 (56.2 bits)