BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0007.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...   236   6e-64

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  236 bits (603), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 143/165 (86%)

Query: 2   ADGLPTLDMTASRYINGRPNQPGSRGDRDTVVGLNLTIPIFDGFANGYKVDGAQAQLEMR 61
           ++G+PTLD++A +Y NGRPNQ G+RGDR+ +VGLNLT+PIF+GFA  YKV GAQAQ+E R
Sbjct: 320 SEGMPTLDLSARQYANGRPNQAGNRGDRERMVGLNLTVPIFEGFARDYKVGGAQAQIEAR 379

Query: 62  EAELREVQAQVLGDIATTYAEATTALRSMASARGLLEAAQRSVESVRRKYDTGAADIVEM 121
           EAEL+EVQ QVLGDIA+TYAEA TAL S++S+R LL+AAQ +V+SVRRKYD GAADIVEM
Sbjct: 380 EAELQEVQTQVLGDIASTYAEAMTALNSLSSSRRLLDAAQGAVDSVRRKYDAGAADIVEM 439

Query: 122 LNAQTALADAELERIRALGEWRSARLRLLANAGEMGRASFTKAAR 166
           LNAQTAL++A+ ER++A+ +WRSARLRLLANAG MGR +    AR
Sbjct: 440 LNAQTALSEADQERVKAMSDWRSARLRLLANAGRMGRWAVAGNAR 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 482,284
Number of extensions: 17769
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)