BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0003.p
         (95 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312183|ref|YP_003776275.1| lactoylglutathione lyase [Herba...   162   4e-42
gi|300312136|ref|YP_003776228.1| lactoylglutathione lyase [Herba...   113   3e-27

>gi|300312183|ref|YP_003776275.1| lactoylglutathione lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 128

 Score =  162 bits (411), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 88/106 (83%), Gaps = 12/106 (11%)

Query: 1   MSLIDHLDHLVLTSVDPAATEYFYVDVLGMTLETFGEGRKAFRFGNQKINLHVRGKEFEP 60
           MSLIDHLDHLVLTS++P AT +FYV+VLGMTLETFG+GR AFRFGNQKINLHVRGKEFEP
Sbjct: 1   MSLIDHLDHLVLTSINPDATTHFYVEVLGMTLETFGQGRIAFRFGNQKINLHVRGKEFEP 60

Query: 61  KAHLP------------VPLEQVIARLQEKGWPIIEGPVLRTGATH 94
           KAHLP            VPLE+VIARL+E  WPIIEGPVLRTGAT 
Sbjct: 61  KAHLPVPGALDLCFMASVPLEKVIARLEEMNWPIIEGPVLRTGATQ 106


>gi|300312136|ref|YP_003776228.1| lactoylglutathione lyase
          [Herbaspirillum seropedicae SmR1]
          Length = 99

 Score =  113 bits (282), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 60/77 (77%), Gaps = 12/77 (15%)

Query: 30 MTLETFGEGRKAFRFGNQKINLHVRGKEFEPKAHLP------------VPLEQVIARLQE 77
          MTLET G+GR AFRFGNQKINLHVRGKEFEPKAHLP            VPLE+VIARLQE
Sbjct: 1  MTLETSGQGRIAFRFGNQKINLHVRGKEFEPKAHLPVPGALDLCFMASVPLEKVIARLQE 60

Query: 78 KGWPIIEGPVLRTGATH 94
            WPIIEGPVLRTGAT 
Sbjct: 61 MNWPIIEGPVLRTGATR 77


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 321,823
Number of extensions: 12426
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 1,619,870
Length adjustment: 64
Effective length of query: 31
Effective length of database: 1,316,830
Effective search space: 40821730
Effective search space used: 40821730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)