BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0002.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309450|ref|YP_003773542.1| hemin transport protein [Herbas...   483   e-138

>gi|300309450|ref|YP_003773542.1| hemin transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  483 bits (1244), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/358 (63%), Positives = 280/358 (78%), Gaps = 1/358 (0%)

Query: 28  GCATQP-SLSERWAELQRSQPKLHTRDAARELGVKESALLATQVGRNAVRLKGEPADIEA 86
           GCA  P +LS+RW +LQ++QP+LH R+AA +LGV E+ LLA+     A RL  +  D++A
Sbjct: 23  GCAANPPTLSQRWTQLQQAQPRLHLREAAHQLGVSEAELLASDANWQATRLTSDARDLQA 82

Query: 87  LFERLPELGRIKAITRNEDAVLERSGEVTPVKRDEQGRVIPGTGFAGGPIDLRFATAKWG 146
           L+ERL ELGRIKA+ RN+D +LER+G VTP +RDEQGRV+PGTG AGGPIDLR    +WG
Sbjct: 83  LYERLAELGRIKAVIRNDDVMLERTGAVTPARRDEQGRVVPGTGLAGGPIDLRIGGVQWG 142

Query: 147 SAFAVVQAGRDGKTSRSLQFFDRQGDAVHKVYLDNEQHVAQFDRLVADFRLPDQQADLNI 206
           SAFAV Q GRDGK  RSLQFFD+ G A+HK+YLDN++H+A ++RLVA+FR+  Q A L  
Sbjct: 143 SAFAVAQPGRDGKALRSLQFFDQHGQAIHKIYLDNDEHIAAYERLVAEFRIAGQPAPLIA 202

Query: 207 EPGPVTATAQPPAPPSAEAIRELRQSWHELTDVHQFPRLLRELKLTREQALQLIGPDSAW 266
            P P    A      SA  + +LRQ+W +LTDVHQFPRLLRELKL+REQALQLIG DSAW
Sbjct: 203 LPAPTQPPADVRGTASAADVAQLRQAWTKLTDVHQFPRLLRELKLSREQALQLIGDDSAW 262

Query: 267 RIAPQAAQALLEDARQRQQPIMVFVSNGGMTQIYSGLIGKTAVAGDWYNVLDPDFNLHLR 326
           RI+ Q  Q L++DAR R+QPIM FVS GGMTQIYSG+I +++ +G WY VL  DF L +R
Sbjct: 263 RISAQGLQLLMDDARARRQPIMAFVSQGGMTQIYSGMIDRSSNSGAWYEVLGEDFRLKVR 322

Query: 327 AKAVDHGWVVRRPTDHGMITSVEFYDAQGKQIVNFFSRRDRGQPETMQWRNMVEALPR 384
           +  +DHGWVVRRPTDHGM+TSVEFYDA G+Q+VNFFSRRDRGQPET QWR MVEALPR
Sbjct: 323 SATIDHGWVVRRPTDHGMVTSVEFYDAAGRQLVNFFSRRDRGQPETAQWRRMVEALPR 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,153,765
Number of extensions: 48546
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)