BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0183.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   488   e-139
gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   356   e-100
gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronat...    58   9e-10

>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  488 bits (1257), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/254 (92%), Positives = 245/254 (96%)

Query: 1   MDVRSAEFTKYAANAMLATRISFMNELANLADRVGADIESVRHGIGSDPRIGHSFLYAGC 60
           MDVRSAEFTKYAANAMLATRISFMNELANLAD+VGADIESVRHGIGSDPRIGHSFLYAGC
Sbjct: 206 MDVRSAEFTKYAANAMLATRISFMNELANLADKVGADIESVRHGIGSDPRIGHSFLYAGC 265

Query: 61  GYGGSCFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVVTRFGEDLAGKHFA 120
           GYGGSCFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVV RFGEDLAGKHFA
Sbjct: 266 GYGGSCFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVVARFGEDLAGKHFA 325

Query: 121 IWGLAFKPNTDDMREASSRVLIGELVRRGASVAVYDPVAMKEAARVLELDFADESDRLQQ 180
           +WGLAFKPNTDDMREASSRVLIGELVRRGA+VAVYDPVAMKEA+RVL+LDFAD++  LQ+
Sbjct: 326 LWGLAFKPNTDDMREASSRVLIGELVRRGATVAVYDPVAMKEASRVLQLDFADDAALLQR 385

Query: 181 IRFAASPMDTLQGADALAIVTEWKAFRSPDFERVKAALKHPVIFDGRNLFDPQLMADSGI 240
           IRF  SPMDTLQ ADALAIVTEWKAFRSPDFERVKA LK+PVIFDGRNLFDPQLMADSGI
Sbjct: 386 IRFGTSPMDTLQDADALAIVTEWKAFRSPDFERVKATLKNPVIFDGRNLFDPQLMADSGI 445

Query: 241 EYYGIGRSLQARAQ 254
           EYYGIGRSL AR Q
Sbjct: 446 EYYGIGRSLLARGQ 459


>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  356 bits (914), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/247 (69%), Positives = 198/247 (80%)

Query: 1   MDVRSAEFTKYAANAMLATRISFMNELANLADRVGADIESVRHGIGSDPRIGHSFLYAGC 60
           MDV+SAEFTKYAANAMLATRISFMNELANLADR+G DIE VR GIGSDPRIG SFLYAG 
Sbjct: 206 MDVKSAEFTKYAANAMLATRISFMNELANLADRLGVDIEHVRKGIGSDPRIGFSFLYAGT 265

Query: 61  GYGGSCFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVVTRFGEDLAGKHFA 120
           GYGGSCFPKDVQAL RTA ++ Q L IL +VE VND QK VL KK+V R GEDL+GK FA
Sbjct: 266 GYGGSCFPKDVQALARTASEHGQELEILGSVESVNDKQKQVLLKKIVARLGEDLSGKTFA 325

Query: 121 IWGLAFKPNTDDMREASSRVLIGELVRRGASVAVYDPVAMKEAARVLELDFADESDRLQQ 180
           +WGLAFKPNTDDMR A SRV++ EL++RGA V VYDPVAM+EA     LD AD   +   
Sbjct: 326 VWGLAFKPNTDDMRAAPSRVIVRELLQRGAKVQVYDPVAMEEARHAFALDLADLPGKEAD 385

Query: 181 IRFAASPMDTLQGADALAIVTEWKAFRSPDFERVKAALKHPVIFDGRNLFDPQLMADSGI 240
           + +A   M+ L+GADA+ IVTEWK+F+SPDF  VKAALK P++FDGRNLF+P  MA  G+
Sbjct: 386 LHYAGGAMEALEGADAVVIVTEWKSFKSPDFAAVKAALKEPLVFDGRNLFEPVTMARLGV 445

Query: 241 EYYGIGR 247
           EY+ IGR
Sbjct: 446 EYHAIGR 452


>gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 3   VRSAEFTKYAANAMLATRISFMNELANLADRVGADIESVRHGIGSDPRIGHSFLYAGCGY 62
           ++ AE  K   N      I+ MNEL+ + D++G D   V    G+      +FL    G 
Sbjct: 196 IKVAEAAKVIENTQRDLNIALMNELSIIFDKIGIDTLEVLQAAGTK----WNFLPFRPGL 251

Query: 63  -GGSCFPKDVQALERTARDYDQSLLILRAVEQVNDLQKHVLGKKVVTRF---GEDLAGKH 118
            GG C   D   L   A        ++ A  ++ND     + +K V      G  + G  
Sbjct: 252 VGGHCIGVDPYYLTHKAEMLGYHPQVILAGRRINDGMAKFVAEKTVKSMIAAGFPIKGSK 311

Query: 119 FAIWGLAFKPNTDDMREASSRVLIGELVRRGASVAVYDPVA 159
             + GL FK N  D+R +    ++ EL   G  V V+DPVA
Sbjct: 312 VNVLGLTFKENCPDLRNSKVVDIVTELQSYGVEVHVHDPVA 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 764,521
Number of extensions: 31359
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)