BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0182.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312978|ref|YP_003777070.1| ADP-heptose synthase [Herbaspir...   555   e-159

>gi|300312978|ref|YP_003777070.1| ADP-heptose synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  555 bits (1430), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/309 (91%), Positives = 298/309 (96%)

Query: 1   VDKNIAAAWDSARILIVGDVMLDRYWFGEVNRISPEAPVPVVRVERKEERLGGAANVARN 60
           ++K++ +AW +ARIL+VGDVMLDRYWFGEVNRISPEAPVPVVRVERKEERLGGAANVARN
Sbjct: 1   MNKDLVSAWSNARILVVGDVMLDRYWFGEVNRISPEAPVPVVRVERKEERLGGAANVARN 60

Query: 61  TASLGAQTALLGVTGDDEPARVMESMLGEMGIRSHLNRDPGISTIVKLRVIGRQQQLVRI 120
            ASLGAQTALLGVTGDDEPARVM++ML EMGI SHLNRDP ISTIVKLRVIGRQQQLVRI
Sbjct: 61  IASLGAQTALLGVTGDDEPARVMDAMLREMGIASHLNRDPSISTIVKLRVIGRQQQLVRI 120

Query: 121 DFEEAPTDTVLRDKLTQFNSLVADYDVIIFSDYAKGGLVNVAEMIATASKLGKRILVDPK 180
           DFEEAPTDTVLRDKLTQFN+LVADYDVI+FSDYAKG LVNVAEMIATA KLGKRILVDPK
Sbjct: 121 DFEEAPTDTVLRDKLTQFNTLVADYDVILFSDYAKGSLVNVAEMIATARKLGKRILVDPK 180

Query: 181 GDDFARYAGASVLTPNKSELVRIVGQWKNEEDLTARAQKLRAELNLEALLLTRSEEGMSL 240
           GDDF RY GAS+LTPNKSELVRIVGQWKNE+DLTARAQKLRAEL LEALLLTRSEEGMSL
Sbjct: 181 GDDFQRYVGASLLTPNKSELVRIVGQWKNEDDLTARAQKLRAELQLEALLLTRSEEGMSL 240

Query: 241 YRDGEVTHFPTMAREVFDVSGAGDTVIGTLAVMLGAGASLVDAVTMANRAGGIVVGKLGT 300
           YRDGEVTHFPTMAREVFDVSGAGDTVIGTLAVMLGAGASLV+AVTMANRAGGIVVGKLGT
Sbjct: 241 YRDGEVTHFPTMAREVFDVSGAGDTVIGTLAVMLGAGASLVEAVTMANRAGGIVVGKLGT 300

Query: 301 ATVTREELL 309
           ATVTREELL
Sbjct: 301 ATVTREELL 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 862,859
Number of extensions: 32540
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)