BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0171.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311238|ref|YP_003775330.1| LacI family transcription regul... 152 2e-38 gi|300310488|ref|YP_003774580.1| LacI family transcription regul... 139 2e-34 gi|300310423|ref|YP_003774515.1| GntR family transcription regul... 139 3e-34 gi|300310825|ref|YP_003774917.1| LacI family transcription regul... 81 6e-17 gi|300309932|ref|YP_003774024.1| transcription regulator protein... 75 4e-15 >gi|300311238|ref|YP_003775330.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 119/209 (56%), Gaps = 8/209 (3%) Query: 15 TNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAAR 74 T VT EDVA A VS +VS + +PE VSP R++ I ++GY+PN LAG LA+ R Sbjct: 12 TRAVTKEDVARAAGVSHITVSRVINSPEKVSPATRERVEAFIASMGYIPNLLAGGLASRR 71 Query: 75 TRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTA 134 TR + IVP++ ++ F ET+ L ++ YQLLLG T Y E ET LV F+ Sbjct: 72 TRIVAAIVPTISHSIFAETLRGLSEQLCMQGYQLLLGQTNYSEEAETGLVEVFIGRRVDG 131 Query: 135 LVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQGATR 194 LV+TG H+ TR L+ A PV E W++ + P + GF + A G M +L+Q+G R Sbjct: 132 LVLTGVQHSPMTRQRLKAAGIPVVETWDLTDTPIDMLAGFDNHAAGRAMGDYLYQKGYRR 191 Query: 195 IAFVG-------ARMDADRDFARHWHGMA 216 +AFVG AR+ R+ RH HG A Sbjct: 192 MAFVGGDDPRGMARVAGLRESLRH-HGAA 219 >gi|300310488|ref|YP_003774580.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 4/203 (1%) Query: 3 QNNKTAARSRRGTNR----VTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDT 58 Q+ A+ RRG+ + VT+ DVA A V+ + S L P AVSP++ +++ A++ Sbjct: 17 QDGDAASPRRRGSRKSAGGVTLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEK 76 Query: 59 LGYVPNKLAGSLAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLE 118 GYVPN LAG LA+ ++R + V+VP++ F E V L + YQ++LG + Y+ Sbjct: 77 TGYVPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENS 136 Query: 119 RETELVRTFLSWSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVA 178 RE L+ + P +V+TG + R L + PV E W++ P + VGFSH A Sbjct: 137 REDALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVETWDLTPTPIDMLVGFSHEA 196 Query: 179 VGEVMAAHLHQQGATRIAFVGAR 201 +G +A +LHQ+G ++A VG R Sbjct: 197 IGREVARYLHQRGRKKVAVVGGR 219 >gi|300310423|ref|YP_003774515.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 113/200 (56%) Query: 4 NNKTAARSRRGTNRVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVP 63 + A R R T RVT+ DVAA A VS +VS L+ P V + RI AID LGYVP Sbjct: 12 KSPPAVRGSRATGRVTIIDVAAEAGVSPMTVSRALKTPALVQEQSRQRILEAIDKLGYVP 71 Query: 64 NKLAGSLAAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETEL 123 N+ A +LA+AR++ + V+VPSL NA F ET++ ++ YQ L+G T YD +E EL Sbjct: 72 NQAAATLASARSQVVAVLVPSLTNAVFIETLSGIRDYLASVGYQFLIGETGYDRHKEEEL 131 Query: 124 VRTFLSWSPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVM 183 + T+L+ +P +++ ++ ++ P M+++G VGFS G + Sbjct: 132 IATYLAHAPAGFLLSSSQQHDILQSRPASRAIPAVRMFDLGRSQQDYSVGFSQTRAGHAV 191 Query: 184 AAHLHQQGATRIAFVGARMD 203 A HL ++G R AF+ A++D Sbjct: 192 ARHLAERGYRRPAFLAAQLD 211 >gi|300310825|ref|YP_003774917.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 382 Score = 81.3 bits (199), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 1/188 (0%) Query: 12 RRGTNRVTMEDVAARAKVSASSVSLYLRNP-EAVSPRLSPRIKRAIDTLGYVPNKLAGSL 70 + GT+RVT+ VA A VS +SVS YL +A+S RL +I + I LGY P+++A L Sbjct: 22 KTGTDRVTIAQVAREAGVSKTSVSRYLGGEFDALSVRLREQIGKTIARLGYQPSQMARGL 81 Query: 71 AAARTRAIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSW 130 RTR IG++V + N + + + +H Y L+L T D RE + + S+ Sbjct: 82 KGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSY 141 Query: 131 SPTALVVTGCHHNEATRTLLRMADTPVAEMWEIGEEPFHLQVGFSHVAVGEVMAAHLHQQ 190 S L+ N L A PV + E VG +V ++ HL Q Sbjct: 142 SVEGLLFNTQGRNVTPLHELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATRHLLAQ 201 Query: 191 GATRIAFV 198 G T IA V Sbjct: 202 GYTDIALV 209 >gi|300309932|ref|YP_003774024.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 7/203 (3%) Query: 17 RVTMEDVAARAKVSASSVSLYLRNPEAVSPRLSPRIKRAIDTLGYVPNKLAGSLAAARTR 76 R +++ VA A VS ++VS L P +VS + +I R+I LG+ PN +L A +R Sbjct: 2 RPSIKQVAHLAGVSIATVSRLLNKPGSVSAETAEKIHRSIAELGFRPNFTGRNLRAGNSR 61 Query: 77 AIGVIVPSLGNAFFTETVAALQKEFDRHDYQLLLGATEYDLERETELVRTFLSWSPTALV 136 +GV+VP+L N F + + ++ DY ++ TEY E ET V L ++ Sbjct: 62 TVGVVVPTLSNTVFAQCLQGIELAARALDYSVMFTTTEYLPEEETAAVELLLGHRVDGMI 121 Query: 137 VTGCHHN-EATRTLLRMADTPVAEMW-EIGEE----PFHLQVGFSHVAVGEVMAAHLHQQ 190 +T + AT LL P + ++G + P V + A AHL Sbjct: 122 LTVADASANATLDLLERERIPFVLAYNQLGTDQTAAPARASVSVDNRAAACDAVAHLIGL 181 Query: 191 GATRIAFVGARMDA-DRDFARHW 212 G RI + R +A DR R++ Sbjct: 182 GHRRIQMLSGRFNASDRAMQRYY 204 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.130 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 632,717 Number of extensions: 24596 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 7 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)