BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0170.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   218   5e-58
gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   158   6e-40

>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  218 bits (555), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 122/288 (42%), Positives = 161/288 (55%), Gaps = 4/288 (1%)

Query: 33  LPAAAALGECPRWDEQRQHLVWVDILEQRLHRYDPATGEDSYVTLPEAIGCVSLGEHGGY 92
            P    LGE P W  Q   L W+DI  + +HR  P +G+     LPE  G +     GG 
Sbjct: 15  FPEPMLLGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQGGL 74

Query: 93  IAGLRSGLWELDGAGQLQQQLAVNPEDQAGSRFNDGRCDPAGRFLAGTIDEPKSGARAHL 152
           +  +R+G++ L+        L   P D +  RFNDGRCD +GRF  GTI EP+      L
Sbjct: 75  VVAIRTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGTL 134

Query: 153 YRLRPSGALEVLADGLLTSNGLAFSPDGRWMYHSDTPNFVIWRRSYDPITG---DCGPRQ 209
           Y      AL      ++TSNGLAFS D R MYH++TP   I    YD  TG   +C   +
Sbjct: 135 YCFE-RNALRDAHHAVVTSNGLAFSSDQRLMYHANTPAHRINLYDYDLATGATSNCRLLR 193

Query: 210 VWATITPTATDRGRPDGAAVDAEGHYWSAFYEGGRLVRFAPDGSVVARYPLPVQCPTMCA 269
            + +        GRPDGAAVD++G YW A +EGGR++R +P G ++    LP +CPTM A
Sbjct: 194 QFDSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMVA 253

Query: 270 FGGADLRTLFITSARAGRPGEELAQQPLAGGLFAMRTDVPGCIEPRWR 317
           FGG DLRTL+IT+ R GR   ELAQ P +G + A+R DVPG +E  +R
Sbjct: 254 FGGDDLRTLYITTGRNGRSPAELAQYPESGCVLAVRVDVPGQLEYSYR 301


>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  158 bits (399), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/284 (36%), Positives = 147/284 (51%), Gaps = 8/284 (2%)

Query: 39  LGECPRWDEQRQHLVWVDILEQRLHRYDPATGEDSYVTLPEAIGCVSL-GEHGGYIAGLR 97
           LGE   W ++ Q + W DI   RL  +DP TG      +PE + C +   +    + GL 
Sbjct: 13  LGEGVLWCDRSQSVFWTDIHASRLWNHDPQTGLTRSWGMPERLCCYAFTADPQQLLIGLE 72

Query: 98  SGLWELDGAGQLQQQLAVNPEDQAGSRFNDGRCDPAGRFLAGTIDEPKSGA-RAHLYRLR 156
           S L   + +      +    +D   +R NDGRCD  GRF+ GT++E    A  A  YRL 
Sbjct: 73  SRLAFFNLSTGTIAPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDAGRAPIASFYRLN 132

Query: 157 PSGALEVLA-DGLLTSNGLAFSPDGRWMYHSDTPNFVIWRRSYDPITGDCGPRQVWATIT 215
               LE L+   +  SN + FS DG+ MYH D+    I    YD  +G  G ++V+A + 
Sbjct: 133 TDLTLERLSLPSIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDTASGAVGGQRVFADVA 192

Query: 216 PTATDRGRPDGAAVDAEGHYWSAFYEGGRLVRFAPDGSVVARYPLPVQCPTMCAFGGADL 275
                 G PDG+ +DAEG+ W+A + G R+VR+APDG +     +P   P+  AFGGA  
Sbjct: 193 QP----GGPDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDRVVAIPTSQPSCVAFGGAQF 248

Query: 276 RTLFITSARAGRPGEELAQQPLAGGLFAMR-TDVPGCIEPRWRG 318
            TL++T+A  G   E+ A  P AG LFA+   DV G  E R+ G
Sbjct: 249 DTLYVTTAHEGMSAEQRAADPQAGALFAVALADVRGLPEVRFAG 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,161,321
Number of extensions: 55015
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)