BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0159.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311805|ref|YP_003775897.1| two component hybrid sensor his...    67   8e-13

>gi|300311805|ref|YP_003775897.1| two component hybrid sensor
          histidine kinase/response regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 1278

 Score = 67.0 bits (162), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%)

Query: 6  SEFSWLSGGGEMGKLIRAMDWSSTPLGPLDSWPQSLRTAVSLCLSSTFPILIAWGPHDIQ 65
          ++FSWL G G   +++ A DW+++PLG    W   LR  ++  L S  P L+ WG     
Sbjct: 14 ADFSWLRGAGPAAQILTASDWTASPLGAPAQWSPMLRATLNQILLSPTPSLLVWGGARSM 73

Query: 66 IYNDAYRPICGAKHPESMG 84
          +YNDA+    G+ HP ++G
Sbjct: 74 LYNDAFAACLGSAHPAALG 92


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 645,695
Number of extensions: 26700
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)