BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0158.p (978 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 158 2e-39 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 157 3e-39 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 148 2e-36 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 146 9e-36 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 139 2e-33 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/430 (30%), Positives = 208/430 (48%), Gaps = 19/430 (4%) Query: 83 RKAEELAQIDRAKTAFFSNISHEFRTPLTLMVGPLDDALADQAEPLGPAQRKRLEVTHRN 142 R EE + AK+ F + +SHE RTP+ ++G L + L + L QR + H Sbjct: 336 RLKEEADHANEAKSHFLAMVSHEIRTPMNGILG-LSELLMESG--LSSKQRDYADSIHGA 392 Query: 143 SLRLLKLVNALLDFSRIEAGRAKASFVATDLASLTEDLASVFRSTLEKAGLHYEVKTTPL 202 + L++++N +LDFS+IE+G+ VA L ++L+ ++R +L++ + +++ Sbjct: 393 TGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLD-C 451 Query: 203 PEPVFV--DRDMWEKIVFNLLSNAFKFTFEGSITVLLE-------PLAHSVRLSVTDTGS 253 PE + V D ++++ NLLSNA KFT G + + + P + ++TDTG Sbjct: 452 PENLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGI 511 Query: 254 GIALDQQARVFERFHRIDNAHGRTYEGTGIGLALIQELVKLHHGQIGVHSVPGAGSTFFV 313 GI+ + ++F F + D++ R + GTG+GLA+ + LV+L G I S+PG + F Sbjct: 512 GISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSF 571 Query: 314 EIPFGTAHLQADDVIRADAVAISQDRQPGQAFVEEAQAWLPAATSALLATTAAEPVTAVA 373 EI A A + + A A A A + + A +P + V Sbjct: 572 EILCPEASTPAPEPVSEAAAPAPATALATTAPALPPAA--EAPGTLMPPDNAPQPPSNVD 629 Query: 374 PGLPPAGDAVHPVRIVIADDNRDMRDYLQRLLGDYADV-QTCPDGEAAWEAVCAAPPDLV 432 + RI++A+D R L+ LL + Q +G A EA+ DLV Sbjct: 630 ASATVLPSLLAGARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGHYDLV 689 Query: 433 LSDVMMPVLDGFGLLARIKRDARTR---EVPVILLSARAGEEARIEGIAAGADDYLVKPF 489 L D MMP++DG+ A I+ R P+I L+A A E R + AG DDYL KPF Sbjct: 690 LMDCMMPIMDGYQATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPF 749 Query: 490 AATELLIRVK 499 L+ V+ Sbjct: 750 TQVGLMQTVE 759 Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 11/268 (4%) Query: 622 GGFVGAIVDVHEEREAKRNLELLAQDLTTINRRQREFLVTLAHELRNPLAPIRNGLEVMK 681 GGFV V E L ++ N + FL ++HE+R P+ I GL + Sbjct: 315 GGFVLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGIL-GLSELL 373 Query: 682 LMGAGNERQHNIHQMMDRQIRHLAHLIEDLLDISRITEGKIKLRKQHMSVKSALASAVEI 741 + + +Q + + L +I D+LD S+I GK+ L + ++ Sbjct: 374 MESGLSSKQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDL 433 Query: 742 SMPLIEKN--RHKLELEAPESDLFLQADTHRVVQVVSNILNNAAKYTPPGGL-IRVMARM 798 P +++ + L L+ PE +L + D R+ QV+ N+L+NA K+T G + + + AR Sbjct: 434 YRPSLQRKDVQFDLHLDCPE-NLSVVGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQ 492 Query: 799 DGDD-----VLISVSDNGVGLAAEDIGTVFDMFTQIQSEVDRAQGGLGIGLHLVKRLVDL 853 D + +++D G+G++ E + +F F Q S + R GG G+GL + K LV+L Sbjct: 493 DESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVEL 552 Query: 854 HEGSVSVTS-PGPGLGATFAVRLPQTTT 880 G+++ S PG +F + P+ +T Sbjct: 553 MGGTIACQSIPGESTRFSFEILCPEAST 580 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 127/424 (29%), Positives = 195/424 (45%), Gaps = 50/424 (11%) Query: 82 QRKAEELAQIDRAKTAFFSNISHEFRTPLTLMVGPLDDALADQAEPLGPAQRKRLEVTHR 141 QR E + AK+ F + +SHE RTPL ++G D P PA++ + V R Sbjct: 675 QRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP--PARKDAIGVIRR 732 Query: 142 NSLRLLKLVNALLDFSRIEAGRAKASFVATDLASLTEDLASVFRSTLEKAGLHYEV-KTT 200 + LL L++ LLD ++IEAG+ + + L + E + +F E+ GLH+ K+ Sbjct: 733 SGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSG 792 Query: 201 PLPEPVFVDRDMWEKIVFNLLSNAFKFTFEGSITVLLEPLAHSVRLSVTDTGSGIALDQQ 260 LP+ V D+ +I+ NLL NA KFT G +T+ L V DTG GIA D + Sbjct: 793 RLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIAYFDVIDTGIGIADDDR 852 Query: 261 ARVFERFHRIDNAHGRTYEGTGIGLALIQELVKLHHGQIGVHSVPGAGSTFFVEIPFGTA 320 R+F F R A+ R GTG+GLA+ + LV + G++ V S G GS+F ++I Sbjct: 853 ERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHLKIYLPEV 912 Query: 321 HLQADDVIRADAVAISQDRQPGQAFVEEAQAWLPAATSALLATTAAEPVTAVAPGLPPAG 380 H+ + +D+ G AG Sbjct: 913 HVPRPRIKL-------EDQMSGY-----------------------------------AG 930 Query: 381 DAVHPVRIVIADDNRDMRDYLQRLLGDYA-DVQTCPDGEAAWEAVCAAPPDLVLSDVMMP 439 + H I++ DD R L+ +L V G A E + A PDLVL D+ MP Sbjct: 931 PSRH---ILVVDDQASQRRLLKDMLMPLGFTVSEADSGLACMETLGHALPDLVLLDIAMP 987 Query: 440 VLDGFGLLARIKRDARTREVPVILLSARAGEEARIEGIAAGADDYLVKPFAATELLIRVK 499 +DG+ +AR R ++P++L+SA A E +D++VKP + ELL +++ Sbjct: 988 QMDGWS-VARAIRARGLAQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYHELLGKIR 1046 Query: 500 SQVD 503 + Sbjct: 1047 QHLQ 1050 Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 160/356 (44%), Gaps = 8/356 (2%) Query: 603 GYRWVI---DSGTPLQAEDDQPGGFVGAIVDVHEEREAKRNLELLAQDLTTINRRQREFL 659 G W++ +S Q E ++ + ++ H++ +A+ L+ + + N + F+ Sbjct: 635 GAWWLVLTNESRAVAQEESERQTNLLLQEIEAHKQTDAE--LQRAKEAAESANLAKSRFV 692 Query: 660 VTLAHELRNPLAPIRNGLEVMKLMGAGNERQHNIHQMMDRQIRHLAHLIEDLLDISRITE 719 ++HELR PL I +++ + + + ++ R HL LI+ LLDI++I Sbjct: 693 AGMSHELRTPLNSILGYAQILHVDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEA 752 Query: 720 GKIKLRKQHMSVKSALASAVEISMPLIE-KNRHKLELEAPESDLFLQADTHRVVQVVSNI 778 GK++L +++++ L V + P E K H ++ + AD R+ Q++ N+ Sbjct: 753 GKMRLASDELALEAFLEQIVGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINL 812 Query: 779 LNNAAKYTPPGGLIRVMARMDGDDVLISVSDNGVGLAAEDIGTVFDMFTQIQSEVDRAQG 838 L NA K+T GG + + R + V D G+G+A +D +F F + + R Sbjct: 813 LGNAVKFTDHGG-VTLRLRYAREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDI 871 Query: 839 GLGIGLHLVKRLVDLHEGSVSVTSP-GPGLGATFAVRLPQTTTQDRSEATGELPQAESGK 897 G G+GL + + LV + G +SV S G G + LP+ + +G Sbjct: 872 GTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHLKIYLPEVHVPRPRIKLEDQMSGYAGP 931 Query: 898 GLDILIVDDNFDNADMLAMLLNYRGHATHVAGNGAEALRLAQEVSPDVGFIDIGLP 953 IL+VDD +L +L G A +G + PD+ +DI +P Sbjct: 932 SRHILVVDDQASQRRLLKDMLMPLGFTVSEADSGLACMETLGHALPDLVLLDIAMP 987 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 130/417 (31%), Positives = 205/417 (49%), Gaps = 35/417 (8%) Query: 90 QIDRAKTAFFSNISHEFRTPLTLMVGPLDDALADQAEPLGPAQRKRLEVTHRNSLRLLKL 149 Q + AK+ F +++SHE RTP+ ++G + L + +PL PAQ+ L+ ++ LL L Sbjct: 892 QANSAKSLFLASVSHEIRTPMNGVLGMIQ--LLQRTQPL-PAQQDYLDKAEISAKSLLNL 948 Query: 150 VNALLDFSRIEAGRAKASFVATDLASLTEDLASVFRSTLEKAGLHYEVKTTP-LPEPVFV 208 +N LLDFS+++A + + A +L +LA+V + +AG+ + P LP + Sbjct: 949 LNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLVG 1008 Query: 209 DRDMWEKIVFNLLSNAFKFTFEGSITV---LLEPLAH---SVRLSVTDTGSGIALDQQAR 262 D ++++ NL NA KFT +G I V L+PL ++R+ V+DTG GIA D+ Sbjct: 1009 DAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAADRLDD 1068 Query: 263 VFERFHRIDNAHGRTYEGTGIGLALIQELVKLHHGQIGVHSVPGAGSTFFVEIPFGTAHL 322 +F+ F + + + R Y GTG+GLA+ + LV L GQ+ V S PG GS F+ ++ + Sbjct: 1069 IFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDLQLA---V 1125 Query: 323 QADDVIRADAVAISQDRQPGQAFVEEAQAWLP-AATSALLATTAAEPVTAVAPGLPPAGD 381 D V+ A + QP QA A + P A SA P Sbjct: 1126 DDDSVLGPAAADDAARPQPLQAASHTAGSRAPETARSA------------------PDAQ 1167 Query: 382 AVHPVRIVIADDNRDMRDYLQRLLGDYADVQTCPDGEAAWEAVCAAPP---DLVLSDVMM 438 + V+I++ +DN R LL TC D + A+ P DLVL D+ M Sbjct: 1168 CLQGVQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLVLMDLQM 1227 Query: 439 PVLDGFGLLARIKRDARTREVPVILLSARAGEEARIEGIAAGADDYLVKPFAATELL 495 P +DG RI+ R +P++ ++A A E + I AG ++ KP L+ Sbjct: 1228 PGMDGIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIATLI 1284 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 112/429 (26%), Positives = 195/429 (45%), Gaps = 43/429 (10%) Query: 569 IHPEDREAAVAEFVRCQQTRSAFHA-VYRLRHADGGYRWVIDSGTPLQAEDDQPGGFVGA 627 +HP+D + V + +R H V+R+ DGG R+V + +P + Sbjct: 811 VHPDDVDY-VEKTLRAGLAVDGDHEPVFRVVRDDGGIRYVQARAYVQRDGAGRPVRVICI 869 Query: 628 IVDVHEEREAKRNLELLAQDLTTINRRQREFLVTLAHELRNPLAPIRNGLEVMKLMGAGN 687 +D+ + E + NL N + FL +++HE+R P+ + +++++ Sbjct: 870 NLDITQRIEFENNLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLP 929 Query: 688 ERQHNIHQMMDRQIRHLAHLIEDLLDISRITEGKIKLRKQHMSVKS---ALASAVEISMP 744 +Q + + + + L +L+ DLLD S++ +++L Q ++ LA+ + S P Sbjct: 930 AQQDYLDKA-EISAKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPP 988 Query: 745 LIEKNRHKLELEAPESDLFLQADTHRVVQVVSNILNNAAKYTPPGGLIRVMARMD---GD 801 + H + L+ P+ L D HR+ QV+ N+ NA K+T G + R+D G Sbjct: 989 QAGVSLH-IALD-PQLPRRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGR 1046 Query: 802 DVL--ISVSDNGVGLAAEDIGTVFDMFTQIQSEVDRAQGGLGIGLHLVKRLVDLHEGSVS 859 V + VSD G+G+AA+ + +FD FTQ ++ R GG G+GL + K LV L G + Sbjct: 1047 TVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQ 1106 Query: 860 VTSPGPGLGATFAVRL--------------------PQ-------TTTQDRSEATGELPQ 892 V+S PG G+ F L PQ T E P Sbjct: 1107 VSSE-PGRGSRFWFDLQLAVDDDSVLGPAAADDAARPQPLQAASHTAGSRAPETARSAPD 1165 Query: 893 AESGKGLDILIVDDNFDNADMLAMLLNYRGHATHVAGNGAEALRLAQEVSP--DVGFIDI 950 A+ +G+ IL+V+DN N + + LL G A +G+ + +A + + D+ +D+ Sbjct: 1166 AQCLQGVQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLVLMDL 1225 Query: 951 GLPXFFFIE 959 +P IE Sbjct: 1226 QMPGMDGIE 1234 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 138/439 (31%), Positives = 210/439 (47%), Gaps = 55/439 (12%) Query: 84 KAEELAQIDRAKTAFFSNISHEFRTPL--TLMVGPLDDALADQAE-PLGPAQRKRLEVTH 140 KA EL + ++ K+ F +N+SHE RTPL TL++ L LAD + L Q + + Sbjct: 464 KATELERANQYKSEFLANMSHELRTPLNSTLILAKL---LADNKQGNLSDEQVRFAQTIS 520 Query: 141 RNSLRLLKLVNALLDFSRIEAGRAKASFVATDLASLTEDLASVFRSTLEKAGLHYEVKTT 200 LL L+N +LD S++EAG+ + L L ++L++ F T ++ GL ++V+ Sbjct: 521 SAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVE 580 Query: 201 P-LPEPVFVDRDMWEKIVFNLLSNAFKFTFEGSITVLLEPLAHS-VRLSVTDTGSGIALD 258 P +P+ + D +I+ NLLSNA KFT +G +++ + P A + +V DTG GI D Sbjct: 581 PGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDAGGRIAFAVRDTGIGIGED 640 Query: 259 QQARVFERFHRIDNAHGRTYEGTGIGLALIQELVKLHHGQIGVHSVPGAGSTFFVEIPFG 318 Q +FE F + D + R Y GTG+GL++ ++L L G I V S G GS F + +P Sbjct: 641 QHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPPL 700 Query: 319 TAHLQADDVIRADAVAISQDRQPGQAFVEEAQAWLPAATSALLATTAAEPVTAVAPGL-- 376 + QA V A +A +T A V A AP + Sbjct: 701 YSSEQA---------------------VSNTAPEPTPAAAAAASTLQAAHV-ATAPDVRI 738 Query: 377 --PPAGDAVHPVRIVIADDNRDMRDYLQRL-------------LGDYADVQ--TCPDGEA 419 PA A ++ + DD+RD + RL L D A C + Sbjct: 739 NRTPAAAAPQRLQEISIDDDRDRIETSSRLILVIEDDAAFAMILRDLAREMGFQCVVTHS 798 Query: 420 AWEAVCAAP---PDLVLSDVMMPVLDGFGLLARIKRDARTREVPVILLSARAGEEARIEG 476 A E V AA P +L D+ +P G G+L +IKR+ +TR +PV ++S + E Sbjct: 799 ANEGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIKRNPKTRHIPVHVVSV---ADYSHEA 855 Query: 477 IAAGADDYLVKPFAATELL 495 + GA Y +KP EL+ Sbjct: 856 MERGAIGYALKPVQREELI 874 Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 24/245 (9%) Query: 645 AQDLTTINRRQREFLVTLAHELRNPLAPIRNGLEVMKLMGAGNERQHNIHQMMDRQIR-- 702 A +L N+ + EFL ++HELR PL + L + KL+ + +Q N+ D Q+R Sbjct: 465 ATELERANQYKSEFLANMSHELRTPL---NSTLILAKLLA--DNKQGNLS---DEQVRFA 516 Query: 703 --------HLAHLIEDLLDISRITEGKIKLRKQHMSVKSALASAVEISMPLIEKNR---H 751 L LI D+LD+S++ GK+ + + + + LA + S + + + Sbjct: 517 QTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPL-TKLADELSASFAITAQQKGLGF 575 Query: 752 KLELEAPESDLFLQADTHRVVQVVSNILNNAAKYTPPGGLIRVMARMDGDDVLISVSDNG 811 K+E+E P ++ D R+ Q++ N+L+NA K+T G + + G + +V D G Sbjct: 576 KVEVE-PGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDAGGRIAFAVRDTG 634 Query: 812 VGLAAEDIGTVFDMFTQIQSEVDRAQGGLGIGLHLVKRLVDLHEGSVSVTSPGPGLGATF 871 +G+ + +F+ F Q R GG G+GL + + L L G + VTS G G+ F Sbjct: 635 IGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSR-LGEGSIF 693 Query: 872 AVRLP 876 + LP Sbjct: 694 TLSLP 698 Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 22/131 (16%) Query: 369 VTAVAPGLPPAGDAVHPVRIVIADDNRDMRDYLQRLLGDYADVQTCPDGEAAWEAVCAAP 428 + A++ L P G +++ IA + R+ LQR Q PD AP Sbjct: 1047 IFALSSVLEPKG-----MKVEIARNGREALQALQR-------SQDKPD----------AP 1084 Query: 429 PDLVLSDVMMPVLDGFGLLARIKRDARTREVPVILLSARAGEEARIEGIAAGADDYLVKP 488 DLVL D+MMP +DG + I++ A + +P+I L+A+A ++ + + +AAGA+DY+ KP Sbjct: 1085 IDLVLMDIMMPEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKP 1144 Query: 489 FAATELLIRVK 499 +LL V+ Sbjct: 1145 LDVEKLLSLVR 1155 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 124/230 (53%), Gaps = 4/230 (1%) Query: 650 TINRRQREFLVTLAHELRNPLAPIRNGLEVMKLMGAGNERQHNIHQMMDRQIRHLAHLIE 709 ++ R + EFL TL+HELR PL I + + + +R Q+++R R A ++E Sbjct: 45 SVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDADRLVKGLQVIERNARLQAQMVE 104 Query: 710 DLLDISRITEGKIKLRKQHMSVKSALASAVEISMPLIEKNRHKLELEAPESDLFLQADTH 769 DLLD+SR+ GK++L + M + S A+ P E + +L + + L D Sbjct: 105 DLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIELHPALGQGGVIL-GDPA 163 Query: 770 RVVQVVSNILNNAAKYTPPGGLIRVMARMDGDDVLISVSDNGVGLAAEDIGTVFDMFTQ- 828 R+ QVV N+L NA K+TP G + + R D V + VSDNG G+ E +G+VFD FTQ Sbjct: 164 RLQQVVWNLLMNAIKFTPRQGRVSLSLRQHDDTVALEVSDNGRGIKGEFLGSVFDRFTQE 223 Query: 829 --IQSEVDRAQGGLGIGLHLVKRLVDLHEGSVSVTSPGPGLGATFAVRLP 876 GLG+GL + + LV+LH G + S GPG+GA F V LP Sbjct: 224 DVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMGAAFTVTLP 273 Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 133/260 (51%), Gaps = 20/260 (7%) Query: 68 LSTAVSNVLVYLHEQRKAEELA-QIDRAKTAFFSNISHEFRTPLTLMVGPLDDALADQAE 126 L AV+ VL QR A A + R K F + +SHE RTPL +VG L D ++ Sbjct: 25 LPEAVARVL---ETQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSD 81 Query: 127 PLGPAQR--KRLEVTHRNSLRLLKLVNALLDFSRIEAGRAKASFVATDLASLTEDLASVF 184 A R K L+V RN+ ++V LLD SR+ AG+ + DLAS+ E+ + Sbjct: 82 ----ADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAV 137 Query: 185 RSTLE--KAGLHYEVKTTPLPEPVFVDRDMWEKIVFNLLSNAFKFT-FEGSITVLLEPLA 241 R E + LH + + + D +++V+NLL NA KFT +G +++ L Sbjct: 138 RPAAEARQIELHPALGQGGV---ILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHD 194 Query: 242 HSVRLSVTDTGSGIALDQQARVFERFHRID---NAHGRTYEGTGIGLALIQELVKLHHGQ 298 +V L V+D G GI + VF+RF + D + G T G G+GLA+ + LV+LH GQ Sbjct: 195 DTVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQ 254 Query: 299 IGVHSV-PGAGSTFFVEIPF 317 I S PG G+ F V +P Sbjct: 255 IRAASAGPGMGAAFTVTLPL 274 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,939,638 Number of extensions: 126762 Number of successful extensions: 858 Number of sequences better than 1.0e-08: 83 Number of HSP's gapped: 712 Number of HSP's successfully gapped: 120 Length of query: 978 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 884 Effective length of database: 1,174,780 Effective search space: 1038505520 Effective search space used: 1038505520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)