BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0155.p
         (301 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312967|ref|YP_003777059.1| SIR2 family NAD-dependent deace...   425   e-120

>gi|300312967|ref|YP_003777059.1| SIR2 family NAD-dependent
           deacetylase 3 protein [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  425 bits (1092), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/263 (84%), Positives = 242/263 (92%)

Query: 36  QRHRQVLVLTGAGISTASGIPDYRDDSGVRRGRLPIQGTEFRQSEAARKRYWARSMLGWP 95
           +RHRQV+VLTGAGISTASGIPDYRDD+GVRRGRLPIQG EFR+S AAR+RYWARSMLGWP
Sbjct: 38  RRHRQVVVLTGAGISTASGIPDYRDDAGVRRGRLPIQGDEFRRSAAARQRYWARSMLGWP 97

Query: 96  RLSQAIPNAAHRALAQLQQAGHLGGILTQNVDGLHQQAGSRDVIELHGSIHAVRCLACDT 155
           RL+QA PNAAHRALAQLQQAG+LG I+TQNVDGLHQQAGS +VIELHGSIHAVRCLAC +
Sbjct: 98  RLAQAAPNAAHRALAQLQQAGYLGAIVTQNVDGLHQQAGSGEVIELHGSIHAVRCLACAS 157

Query: 156 VYPRAEIQQELARCNPSFVNLQAEALPDGDARLEPEADAAFHVPSCVACGGMLQPDVVFF 215
           VYPR +IQQELARCNP+F +LQA  LPDGDA+LEPEADAAFHVP C ACGG+LQPDVVFF
Sbjct: 158 VYPRTQIQQELARCNPAFTHLQAAPLPDGDAQLEPEADAAFHVPDCPACGGVLQPDVVFF 217

Query: 216 GDGVPPARTAQAEAAAQACDAMLVIGSSLMVLSGFRFPRTVAAAGKPVVAINRGVTRADD 275
           GDGVP AR+AQAEAAA+ACDAMLV+GSSLMVLSGFR PR VA AGKPV AINRGVTRAD 
Sbjct: 218 GDGVPAARSAQAEAAARACDAMLVVGSSLMVLSGFRLPRMVAEAGKPVAAINRGVTRADA 277

Query: 276 LLAFKLREDAESVLPRLATLLGA 298
           LL+ KL+ DAE+VLPRLA LLGA
Sbjct: 278 LLSLKLQADAEAVLPRLAALLGA 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 816,170
Number of extensions: 28917
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,217,395
Effective search space: 262957320
Effective search space used: 262957320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)