BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0153.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313871|ref|YP_003777963.1| thiophene oxidase [Herbaspirill...   281   7e-77
gi|300314031|ref|YP_003778123.1| coenzyme F420-dependent N5,N10-...   241   7e-65

>gi|300313871|ref|YP_003777963.1| thiophene oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 433

 Score =  281 bits (719), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 161/418 (38%), Positives = 232/418 (55%), Gaps = 17/418 (4%)

Query: 27  WRLPGADPHAFVKASHYVEVARIAEAAKFDAVFLADNAAIIEQ----------IDFRPIT 76
           WR P +    F++  +Y+ +AR  E  KFD +F AD  A+  +          I  +  T
Sbjct: 19  WRHPQSRRGGFLELDYYLHIARTLERGKFDLLFFADRLAVSTRYGDSHLHGLYIGDQDAT 78

Query: 77  ALEPTVLLAAIAAATTHIGVIGTASTSYNEPYNIARRFASLDHISGGRAGWNIVTTADLP 136
            L+P  +L A+AAAT+HIG+  T ST+Y++PY++AR FA+LDH+SGGRA WN+VT+ +  
Sbjct: 79  RLDPLPILGALAAATSHIGLGATRSTTYSQPYSLAREFATLDHLSGGRAAWNVVTSVNQG 138

Query: 137 SARNFGLEQVPDHAARYARADEFTQVVKALWNSWEEDAVVGDAASGRFIDDTRVHPIAHR 196
            A NFGL++   H  RY RADEF +V   LW+SW+ DA+       R+ D  +V  I H+
Sbjct: 139 EADNFGLKETLPHDVRYDRADEFLEVTHKLWHSWQPDAL--RLQQDRYADADKVAAIDHQ 196

Query: 197 GAHFQVQGPLNLPRTPQGQPVLVQADGSGDGRELAARHAEAVFSAAHTIEEARAYRLAIH 256
           GAHF V+GPLN+P +PQG PV++QA  S  G++ AAR AE VF+    +   +A+   + 
Sbjct: 197 GAHFSVRGPLNIPASPQGHPVIIQAGSSDRGQDFAARWAEVVFNIQPDLPRLQAFYRDLK 256

Query: 257 ARAAALGRRPQAVKILPGLATIIGATEAQALQRRDELIDMIPWSYSLKRLAGILGVPVAS 316
            RA   GRRPQ ++IL  +   +G +   A + +++   +      L  L+  + V  + 
Sbjct: 257 NRAQQFGRRPQDIRILSAVMPFVGQSRQHARELQEQANALADPLVGLSTLSSHMNVDFSG 316

Query: 317 LDLDRPLPDKLALPNGGNGNHTFFQATLSLVRGRTHTVRDVIRALCGGGGHRVLVGTPEQ 376
             LD PL D        +G    F+   ++   R  T+ D  R    G     + GT   
Sbjct: 317 FALDAPLGDVQV-----SGIQGLFKLLRAISAERQLTLADAGRLYAQGVLTPQIAGTAAD 371

Query: 377 IADEIERWFKAGAADGFNLMPDALPGGLQDFVDGVVPLLQRRGLFRYDYEGSTLREHL 434
           +AD ++    A  ADGF + P  LP G  DFVD V+P LQRRG FR DY G  LR+HL
Sbjct: 372 VADWLQSIIVANGADGFVISPSHLPYGFDDFVDQVIPELQRRGAFRQDYAGRQLRQHL 429


>gi|300314031|ref|YP_003778123.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  241 bits (616), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 222/437 (50%), Gaps = 28/437 (6%)

Query: 13  LNVNILHSGFIPSAWRLPGADPHAFVKASHYVEVARIAEAAKFDAVFLADNAAIIE---- 68
            N+N + S      W  P      +   +++ ++AR+ E  KFD +FLAD   + +    
Sbjct: 11  FNMNCV-SHINHGLWTHPRDRSQDYTDIAYWTDLARLLERGKFDGLFLADIVGVYDVYQG 69

Query: 69  --QIDFRPITAL---EPTVLLAAIAAATTHIGVIGTASTSYNEPYNIARRFASLDHISGG 123
              +  R    L   +P +L+ A+AA T H+G   TA+ +Y  P+  ARR ++LDH+S G
Sbjct: 70  NTDLTLRETIQLPVNDPLMLVPAMAAVTEHLGFGVTANLTYEAPFLFARRMSTLDHLSRG 129

Query: 124 RAGWNIVTTADLPSARNFGLEQVPDHAARYARADEFTQVVKALWN-SWEEDAVVGDAASG 182
           R GWNIVT     +AR  GL +  +H  RY RADEF +VV  LW  SWE+ AV+ D A  
Sbjct: 130 RVGWNIVTGYLDSAARAMGLHEQLEHDQRYDRADEFMEVVYKLWEGSWEDGAVLRDRARR 189

Query: 183 RFIDDTRVHPIAHRGAHFQVQGPLNLPRTPQGQPVLVQADGSGDGRELAARHAEAVFSAA 242
            + D  +VH IAH G ++ V+G      + Q  PVL QA  SG G+   ARHAE VF ++
Sbjct: 190 VYADPAKVHKIAHHGDYYHVEGIHLSEPSRQRTPVLYQAGSSGRGQAFGARHAECVFISS 249

Query: 243 HTIEEARAYRLAIHARAAALGRRPQAVKILPGLATIIGATEAQALQRRDELIDMIPWSYS 302
            + +  R    +I   A   GR P A+KI  GL  + G TE QA +R  E          
Sbjct: 250 QSKDATRKLVQSIRDGAVREGRDPDAIKIFMGLTVVTGRTEQQAQERYREYARYASPEAG 309

Query: 303 LKRLAGILGVPVASLDLDRPLPDKLALPNGGNGNHTFFQATLSLVRGRTH-----TVRDV 357
           L   +   G+  +  +LD P+      P   N       A  SL +  T      T R +
Sbjct: 310 LAHYSAGTGIDFSQYELDEPIR-----PAKTN-------AIESLTKVVTQPELNWTKRKL 357

Query: 358 IRALCGGGGHRVLVGTPEQIADEIERWFKAGAADGFNLMPDALPGGLQDFVDGVVPLLQR 417
           ++ L  GG +  +VG P+++ADE+E W      DG+NL     P   +DFV+ V+P+LQ 
Sbjct: 358 LQQLELGGRYASIVGAPDRVADELESWVADTGIDGYNLTRTVTPESFEDFVELVIPVLQE 417

Query: 418 RGLFRYDYEGSTLREHL 434
           RG ++ +Y   TLRE L
Sbjct: 418 RGSYKREYAQGTLREKL 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,542,434
Number of extensions: 69138
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)