BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0152.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312964|ref|YP_003777056.1| hypothetical protein Hsero_3670...   339   1e-94

>gi|300312964|ref|YP_003777056.1| hypothetical protein Hsero_3670
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  339 bits (870), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/228 (76%), Positives = 185/228 (81%), Gaps = 6/228 (2%)

Query: 28  WFQLPCAAWLRIAAIVLWSLPPAATLALVAGVPGLPGLPHSWRWGPVALVLAGIAMAGWW 87
           WFQLP  AW R+ A  LW     +  A +AG PG       WRW   A  LA +AMA WW
Sbjct: 28  WFQLPGPAWGRMLASGLWCCMALSAYAALAGAPG------HWRWALPAFALATLAMAVWW 81

Query: 88  SSIRPSHARDWADDVARMLVSQVQGDTVTLDNVRNFVWRSETDVDLRWESRQYDLAQLVS 147
             IRPSH R+WADDVARML  QVQGD V L+NVRNF WR+ETD D+ WESRQYDLAQLVS
Sbjct: 82  HGIRPSHEREWADDVARMLAPQVQGDIVRLENVRNFDWRTETDYDISWESRQYDLAQLVS 141

Query: 148 ADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRERDEAFSALGGFFRKFETVIVAAD 207
           ADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRER EAFSALGGFFRKFETVIVAAD
Sbjct: 142 ADLLLSYWMGPAIAHTLVSFGFADGRRLVFSLEIRRERGEAFSALGGFFRKFETVIVAAD 201

Query: 208 EADIIRTRTNARGEDVYLYRLQLRPDQLRRVFLGYLERAAQLRERPRF 255
           E DIIRTRTNARGEDVYLYRLQLR DQLR+VFLGYLERA+QLR+ PRF
Sbjct: 202 ERDIIRTRTNARGEDVYLYRLQLRHDQLRKVFLGYLERASQLRQHPRF 249


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 806,218
Number of extensions: 34436
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)