BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0141.p
         (560 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313029|ref|YP_003777121.1| two component hybrid sensor his...    57   4e-09

>gi|300313029|ref|YP_003777121.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 465 DGGISHLGA-VWSRTRFSGQDVLLLGM-IDLNMQKAHEALMREAKSMADRANQAKSMFLA 522
           DGGI ++ A  + +   +G+ V ++ + +D+  +   E  + +A+  A++AN AKS+FLA
Sbjct: 843 DGGIRYVQARAYVQRDGAGRPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLA 902

Query: 523 QVSHEIRTPLHGAIGHMELLAREELSLPQRQ 553
            VSHEIRTP++G +G ++LL R +  LP +Q
Sbjct: 903 SVSHEIRTPMNGVLGMIQLLQRTQ-PLPAQQ 932


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,629,689
Number of extensions: 64217
Number of successful extensions: 294
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 470
Effective length of database: 1,193,720
Effective search space: 561048400
Effective search space used: 561048400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)