BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0140.p (476 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 116 4e-27 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 79 6e-16 gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 75 1e-14 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 66 5e-12 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 128/463 (27%), Positives = 193/463 (41%), Gaps = 90/463 (19%) Query: 1 MGLVNDILDITKIESQSITLASETMQLNDLLEECAQLFAPLALDK--------------- 45 +G+VND+LD +KI+ + +A L ++E A+ + A +K Sbjct: 136 LGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPR 195 Query: 46 ------------------GLSFSCLPAVALEAPVXKTPN-------------LGVSPSAR 74 L F+ V L + + +G+ Sbjct: 196 LVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTL 255 Query: 75 QRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEPGRGSVFGAEITLALV 134 +R+F QAD S+++++GGTGLGLS+C+RL ELMGG I ++S G GS F E+ + + Sbjct: 256 RRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFELGIPVT 315 Query: 135 EGGGTLPVSRPLAGK--TVAL-HCHDADMAAMLRDYLAEWGAARRDSASTPGAVIHLVAP 191 G G + P A + +AL HDA AAML +YL S A+ L P Sbjct: 316 TGPGMIRSEPPAADRPRRIALVEPHDAS-AAMLHEYLRSAALETLRFGSASDALAALTGP 374 Query: 192 DC----VDDFIACAQHQSVPAVLICPDV-----AMRASLAPGWQQVSAFD---------- 232 +D I Q Q + AV + + A+R L V D Sbjct: 375 GASASGIDAVIVSTQVQDLDAVSVMARLQAERPALRRVLLD--HGVHGLDTGSKPHHEVL 432 Query: 233 -----RHDWLRALASRPAAVEPQ--PVAELVSVA-------AGLDVLVVEDDYVNLTLMQ 278 + LRAL +A E Q P A + + A D+L+VED+ +N + Sbjct: 433 QLPLRKQQLLRALGVTDSAAEAQTSPHARMAAPATPRQGHSGQRDILLVEDNVMNQKVAV 492 Query: 279 QQLQALGCASPRLARDGLDALAQWQAHPADVLITDLGMPGLDGVALATRVREQQ---PHA 335 QL A+G A+ +A +GL+AL + H +++ D MP LDG R+R Q H Sbjct: 493 YQLNAMGYAAD-IAANGLEALERLARHRYALVLMDCQMPLLDGYETTRRIRRMQGELAHT 551 Query: 336 RIIATTA-AGPGSLAQLPAALFDALLIKPASLQQMQEILTRLI 377 I+A TA A G + A D L KP Q+ +L + Sbjct: 552 TIVAMTANAMAGDRERCLEAGMDDYLTKPLLRSQLSAMLAHYL 594 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 42/167 (25%) Query: 1 MGLVNDILDITKIESQSITLASETMQLNDLLEECAQLFAPLALDKGLSFSC--------- 51 + L+NDILD++K+E+ + + E+ L L +E + FA A KGL F Sbjct: 527 LALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVEPGVPQR 586 Query: 52 --------------LPAVALE-------------------APVXKTPNLGVSPSARQRIF 78 L + A++ A + +G+ Q IF Sbjct: 587 METDIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIF 646 Query: 79 KSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEPGRGSVF 125 ++ +QAD S +++GGTGLGLS+ R LA L+GGDI + S G GS+F Sbjct: 647 EAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIF 693 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 48/175 (27%) Query: 3 LVNDILDITKIESQSITLASETMQLNDLLEECAQLFAP----------LALD-------- 44 ++NDILD +KIES + L L++E + L+ P L LD Sbjct: 399 IINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVV 458 Query: 45 ---------------KGLSFSCLPAVALEAPVXKTPN---------------LGVSPSAR 74 + F+ V L + + +G+SP A Sbjct: 459 GDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEAL 518 Query: 75 QRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDITLDSEPGRGSVFGAEI 129 Q++F+ QAD SIS+RFGGTGLGL++ + L ELMGG I S PG + F EI Sbjct: 519 QQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEI 573 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Query: 55 VALEAPVXKTPNLGVSPSARQRIFKSLQQADDSISQRFGGTGLGLSLCRRLAELMGGDIT 114 VAL V T +G++ IF + QA+ S ++R+GGTGLGL++ + L LMGG + Sbjct: 1048 VALRVEVSDT-GIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQ 1106 Query: 115 LDSEPGRGSVFGAEITLAL 133 + SEPGRGS F ++ LA+ Sbjct: 1107 VSSEPGRGSRFWFDLQLAV 1125 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,591,230 Number of extensions: 73643 Number of successful extensions: 494 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 499 Number of HSP's successfully gapped: 6 Length of query: 476 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 387 Effective length of database: 1,198,455 Effective search space: 463802085 Effective search space used: 463802085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)