BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0131.p (355 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4... 608 e-175 gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb... 281 5e-77 gi|300310642|ref|YP_003774734.1| electron transfer component of ... 100 2e-22 >gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase [Herbaspirillum seropedicae SmR1] Length = 360 Score = 608 bits (1569), Expect = e-175, Method: Compositional matrix adjust. Identities = 310/340 (91%), Positives = 322/340 (94%), Gaps = 3/340 (0%) Query: 19 ARAGSQAVAVFRLGEEIFALKDLCTHGNAKLSDGYVEDGCVECPLHQGLFDIRSGAPRCA 78 ARAG QAVAVFRLGEEIFALKDLCTHGNAKLSDGYVEDGCVECPLHQGLFDIRSGAPRCA Sbjct: 21 ARAGGQAVAVFRLGEEIFALKDLCTHGNAKLSDGYVEDGCVECPLHQGLFDIRSGAPRCA 80 Query: 79 PVTEAVRSFPVRVVAGRVEIGVGGEG---DAAAIASTEPALQPVQATLESITRAAPDVAI 135 PVTEAVRSFPVRVVAGRVEIGVGGEG D +AS PA Q VQATLES+TRAAPDVAI Sbjct: 81 PVTEAVRSFPVRVVAGRVEIGVGGEGGGGDVLTVASPAPAAQQVQATLESLTRAAPDVAI 140 Query: 136 LRLRCAAPLSYRAGQYIDLLLEDGQRRSYSMATYARDGSDVLELHVRHLPGGLFTDRLFN 195 LRLRCAAPLSYRAGQYIDLLLEDGQRRSYSMATYA+DGSD+LELHVRHLPGGLFTDRLFN Sbjct: 141 LRLRCAAPLSYRAGQYIDLLLEDGQRRSYSMATYAKDGSDLLELHVRHLPGGLFTDRLFN 200 Query: 196 GMQPGQQFSLEGPAGSFFMREGSEPVILLASGTGFAPVKALVEEAIATGSTRAMRLYWGG 255 GMQPGQQFSLEGPAGSFFMREG++P+ILLASGTGFAPVKALVEEAIA+GSTRAMRLYWGG Sbjct: 201 GMQPGQQFSLEGPAGSFFMREGTQPLILLASGTGFAPVKALVEEAIASGSTRAMRLYWGG 260 Query: 256 RRAADLYLDALCRDWAASLPWFEYVPVLSEADAASGWNGRTGFVHQAVMQDAPAMQSYQV 315 RRAADLYLDALCRDWAASLPWF+YVPVLSEADA SGW+GRTG VH+AVMQD PAMQ YQV Sbjct: 261 RRAADLYLDALCRDWAASLPWFDYVPVLSEADATSGWSGRTGLVHRAVMQDVPAMQQYQV 320 Query: 316 YACGAPVVVESARRDFTATCGLPGTAFFADAFVSKADLRK 355 YACGAPVVVESARRDFTA CGL TAFFADAFVS+ADLRK Sbjct: 321 YACGAPVVVESARRDFTAACGLSETAFFADAFVSRADLRK 360 >gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 281 bits (720), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 134/234 (57%), Positives = 174/234 (74%), Gaps = 4/234 (1%) Query: 125 SITRAAPDVAILRLRCAAP--LSYRAGQYIDLLLEDGQRRSYSMATYARDGSDVLELHVR 182 + + A DV +L L+ A L Y+AGQY++ LL DG+RRSYSMAT A + + LH+R Sbjct: 109 KLDKVADDVIVLSLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMAT-APHKDEHMSLHIR 167 Query: 183 HLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGSE-PVILLASGTGFAPVKALVEEAI 241 HLPGGLFTD++F ++ +EGP G+FF+RE S+ P+ILLASGTGFAP+KA+VE+ Sbjct: 168 HLPGGLFTDQVFTTLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLE 227 Query: 242 ATGSTRAMRLYWGGRRAADLYLDALCRDWAASLPWFEYVPVLSEADAASGWNGRTGFVHQ 301 GS R + LYWGGRR DLY+DALC+ W +LP F+YVPV+S A A W+GRTGFVH+ Sbjct: 228 HAGSKRPVTLYWGGRRPQDLYMDALCQQWEQTLPNFKYVPVVSNAQAEDNWSGRTGFVHR 287 Query: 302 AVMQDAPAMQSYQVYACGAPVVVESARRDFTATCGLPGTAFFADAFVSKADLRK 355 AVM+D P + +QVYACGAP+VVESA+RDF+A CGLP F+AD+F S+ADL K Sbjct: 288 AVMEDFPDLSGHQVYACGAPIVVESAQRDFSAQCGLPQDEFYADSFTSEADLAK 341 >gi|300310642|ref|YP_003774734.1| electron transfer component of chlorobenzoate 1,2-dioxygenase [Herbaspirillum seropedicae SmR1] Length = 351 Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 16/208 (7%) Query: 145 SYRAGQYIDLLLE-DGQRRSYSMATYARDGSDVLELHVRHLPGGLFTDRLFNGMQPGQQF 203 ++ GQY+++ + GQ RSYS ++ + G+ + ++++PGGL ++ L G G Sbjct: 135 AFLPGQYVNIGVPGSGQHRSYSFSSPS--GASRMSFLIKNVPGGLMSNWL-AGASEGATL 191 Query: 204 SLEGPAGSFFMREGSEPVILLASGTGFAPVKALVEEAIATGSTRAMRLYWGGRRAADLYL 263 L GP GSF++R PV++LA GTG AP +++EE G + + L +G R DL L Sbjct: 192 ELTGPLGSFYLRPVKRPVLMLAGGTGLAPFLSMLEELAQQGLDQPVHLIYGVTRDQDLVL 251 Query: 264 DALCRDWAASLPWFEYVPVLSEADAASGWNGRTGFVHQ----AVMQDAPAMQSYQVYACG 319 + A LP F + + AD A+ + R G+V Q AV+ D + VY CG Sbjct: 252 VERLQALADRLPGFSFTTCV--ADPAT-THARQGYVTQHMPAAVLHDG----NVDVYLCG 304 Query: 320 APVVVESARRDFTATCGLPGTAFFADAF 347 P +VE+ ++ F AT G+ +F+ + F Sbjct: 305 PPPMVEAVQKHFQAT-GMQPASFYYEKF 331 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,203,543 Number of extensions: 54688 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 4 Length of query: 355 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 269 Effective length of database: 1,212,660 Effective search space: 326205540 Effective search space used: 326205540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)