BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0126.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 460 e-131 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 192 2e-50 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 183 1e-47 gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 177 6e-46 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 177 7e-46 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 460 bits (1183), Expect = e-131, Method: Compositional matrix adjust. Identities = 243/255 (95%), Positives = 247/255 (96%) Query: 1 MGHEQAAVALSVKGLKKNYGGLAATRDVDLEIAAGHVHAIIGPNGAGKTTLLSLLSGALT 60 M E AA+AL VKGLKKNYGGLAATRDVDLEIAAG VHAIIGPNGAGKTTLLSLLSGAL Sbjct: 1 MVREPAALALVVKGLKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALA 60 Query: 61 ADAGEVHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLDNLQVAVQRGQHRSYGFF 120 ADAGE+HLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVL+NLQVAVQRGQHRSYGFF Sbjct: 61 ADAGEIHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQHRSYGFF 120 Query: 121 HASASDRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACGPRVLLMDEPM 180 HASA DRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIAC PRVLLMDEPM Sbjct: 121 HASAGDRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPM 180 Query: 181 AGMGHEESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVEEIRA 240 AGMGHEESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSV+EIRA Sbjct: 181 AGMGHEESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRA 240 Query: 241 NAEVKLAYLGEEETQ 255 NAEVKLAYLGEEETQ Sbjct: 241 NAEVKLAYLGEEETQ 255 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 149/249 (59%) Query: 5 QAAVALSVKGLKKNYGGLAATRDVDLEIAAGHVHAIIGPNGAGKTTLLSLLSGALTADAG 64 QA L +GL K +G A D+ L A G HA+IGPNGAGKTT ++LL+G +G Sbjct: 7 QADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSG 66 Query: 65 EVHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLDNLQVAVQRGQHRSYGFFHASA 124 V G+ + + ARV G+ R+FQI ++F L+VL+++ +A+Q + Y ++ A Sbjct: 67 RVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVA 126 Query: 125 SDRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACGPRVLLMDEPMAGMG 184 S + AM + + L + + L+ L++G +R +++ LA+A P+VLL+DEP AG+ Sbjct: 127 SQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIP 186 Query: 185 HEESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVEEIRANAEV 244 ES ++ +I L E+T+V +EHDM VF A+R+TVLV G VL G+ EI A+ V Sbjct: 187 SAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRV 246 Query: 245 KLAYLGEEE 253 K YLGE E Sbjct: 247 KEVYLGEAE 255 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 145/243 (59%) Query: 8 VALSVKGLKKNYGGLAATRDVDLEIAAGHVHAIIGPNGAGKTTLLSLLSGALTADAGEVH 67 V L + L K + G A V+L+I GH+HA+IGPNGAGKTT +LL+ L +G++ Sbjct: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 Query: 68 LFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLDNLQVAVQRGQHRSYGFFHASASDR 127 G+ + A G++RSFQI++VF +SVL+N+++ +QR S+ F+ S + Sbjct: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLK 123 Query: 128 AAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACGPRVLLMDEPMAGMGHEE 187 E AM + V L H + L +G +R L++ +A P ++L+DEP GMGHE+ Sbjct: 124 QLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 183 Query: 188 SGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVEEIRANAEVKLA 247 + ALI+ + T+++VEH+M + + DR++VL +GA+LA GS EE+ N +V A Sbjct: 184 VDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVMEA 243 Query: 248 YLG 250 Y+G Sbjct: 244 YMG 246 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 177 bits (450), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 103/244 (42%), Positives = 145/244 (59%) Query: 6 AAVALSVKGLKKNYGGLAATRDVDLEIAAGHVHAIIGPNGAGKTTLLSLLSGALTADAGE 65 AAVALS++GL K + G R VDLE+ AG A+IGPNGAGK++L L+SG ADAG Sbjct: 3 AAVALSLQGLHKAFDGSPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADAGR 62 Query: 66 VHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLDNLQVAVQRGQHRSYGFFHASAS 125 + L G + + Q GL RSFQITS+F LS +N++ A+ Y F+ Sbjct: 63 ITLHGVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRMGG 122 Query: 126 DRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACGPRVLLMDEPMAGMGH 185 A A+TV ++VGL + +LS+ +R L++ + IA V+L+DEP AGM Sbjct: 123 SHEASARALTVLQQVGLAARADVAAGELSYAEQRALELAVTIAADASVILLDEPTAGMSR 182 Query: 186 EESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVEEIRANAEVK 245 ES M+ALI+ + T+++VEHDM+ VF LADR+ V+ G V+A + IRAN +V+ Sbjct: 183 AESAAMVALIREVTMGKTLLMVEHDMQVVFDLADRIAVMDNGRVIACDTAPRIRANEDVQ 242 Query: 246 LAYL 249 YL Sbjct: 243 ALYL 246 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 177 bits (450), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 146/242 (60%), Gaps = 1/242 (0%) Query: 10 LSVKGLKKNYGGLAATRDVDLEIAAGHVHAIIGPNGAGKTTLLSLLSGALTADAGEVHLF 69 L + K YG A + L+I AG VH++IGPNGAGKTTL L+G G + + Sbjct: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 Query: 70 GQPMHGHAEQARVAAGLVRSFQITSVFDELSVLDNLQVAVQ-RGQHRSYGFFHASASDRA 128 G+ + RV GL RSFQ+TS+F LSV +NL++A Q R + + + A Sbjct: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFSA 125 Query: 129 AREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACGPRVLLMDEPMAGMGHEES 188 A A + R+ L+ V + ++LSHG +RRL+VG+A+A P+V+ +DEP +GMG ++ Sbjct: 126 ACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDDI 185 Query: 189 GDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVEEIRANAEVKLAY 248 +M LI L+ + TVVL+EH+M+ V ++DR+TV+ G +LA G EIR++ V+ AY Sbjct: 186 AEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRAY 245 Query: 249 LG 250 LG Sbjct: 246 LG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 660,673 Number of extensions: 22922 Number of successful extensions: 451 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 262 Number of HSP's successfully gapped: 135 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)