BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0123.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312950|ref|YP_003777042.1| lipase [Herbaspirillum seropedi...   513   e-147
gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum serope...   167   8e-43
gi|300311008|ref|YP_003775100.1| esterase/lipase/thioesterase fa...    70   3e-13

>gi|300312950|ref|YP_003777042.1| lipase [Herbaspirillum seropedicae
           SmR1]
          Length = 289

 Score =  513 bits (1322), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/282 (88%), Positives = 261/282 (92%)

Query: 6   IKTDARRVLCPIAECEAGYNLKAAFPDFPQVLQQWQQATAAIATTLLTESDIAYGDAQLQ 65
           I TD RRVLCP+AECEAGYNLKAAFPDFPQVLQQWQQATAAIA TLLTESDI+YGDA LQ
Sbjct: 8   ISTDTRRVLCPVAECEAGYNLKAAFPDFPQVLQQWQQATAAIADTLLTESDISYGDAPLQ 67

Query: 66  RFDFYRAQGAQRPLLVFIHGGYWQGGDKRDIGFIAAPYVKAGISVGVINYSLAPQARIED 125
           RFDFYRA+GAQRPLLVFIHGGYWQGGDKRDIGFIAAPYVKAGISV VINYSLAPQARIED
Sbjct: 68  RFDFYRAEGAQRPLLVFIHGGYWQGGDKRDIGFIAAPYVKAGISVAVINYSLAPQARIED 127

Query: 126 MVAEVQAFLATIAQQADRLGIDVNRVSLMGHSAGGHLAAFVAAQASALPVQAVFAISGVF 185
           MV EVQA L+TIAQQA+RLGIDV+R+SLMGHSAGGHLAAFVAAQ   +PVQAVFAISGVF
Sbjct: 128 MVKEVQACLSTIAQQAERLGIDVDRISLMGHSAGGHLAAFVAAQPGRMPVQAVFAISGVF 187

Query: 186 DLVPLIPTSLNKALTLDEQRADALSPVLQAGPTGTRMHTIIGELETAQFHLQAAVMANCW 245
           DL PLIPTSLNKALTLD+ RADALSPVLQ GP  TR+HTIIGELET QFHLQAAVMANCW
Sbjct: 188 DLAPLIPTSLNKALTLDQVRADALSPVLQTGPAQTRVHTIIGELETLQFHLQAAVMANCW 247

Query: 246 PQVVAHHVVPQTHHYTVLFPLADGDTPVCRAVIAEIGDAGRR 287
           PQVVAHHVVP THHYTVLFPLAD D+ VCRAVIAE+  AGRR
Sbjct: 248 PQVVAHHVVPDTHHYTVLFPLADADSSVCRAVIAEMNSAGRR 289


>gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  167 bits (423), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 144/269 (53%), Gaps = 6/269 (2%)

Query: 19  ECEAGYNLKAAFPDFPQVLQQWQQATAAIATTLLTESDIAYGDAQLQRFDFYRAQGAQRP 78
           E +A YN++A  PDF     ++ +   A        +D+ YG+  LQ  DF+ A    RP
Sbjct: 11  ELDAQYNVRARVPDFQDYFDRFARQGEAARQAHPHLADLPYGEETLQSIDFFPAHSNGRP 70

Query: 79  LLVFIHGGYWQGGDKRDIGFIAAPYVKAGISVGVINYSLAPQARIEDMVAEVQAFLATIA 138
           LLVFIHGGYW+  DK     +A PY++  I+V +INY LAPQ R+ D+ A+    L  + 
Sbjct: 71  LLVFIHGGYWRSLDKHQFSHLALPYLEQDINVALINYRLAPQVRMGDIAADCGRALRLLH 130

Query: 139 QQADRLGIDVNRVSLMGHSAGGHLAAFVAAQASALPVQAVFAISGVFDLVPLIPTSLNKA 198
            +A  L +D N + LMGHSAG HLA  +AA  +A PV+ V A+SG++DL P+  + LN+A
Sbjct: 131 AKAPALRVDANAIWLMGHSAGAHLACVIAALRAA-PVRGVCALSGLYDLEPIRLSYLNEA 189

Query: 199 LTLDEQRADALSPVLQAGPTGTRMHTIIGELETAQFHLQAAVMANCWPQVVAHHV----V 254
           L L        SP+L A P G R     G  E+ +F  Q  V A    Q   H V     
Sbjct: 190 LHLSPADVQQASPLLLAMPDGVRAVLCAGGQESEEFLRQRDVYAANLRQ-SGHQVEVVEA 248

Query: 255 PQTHHYTVLFPLADGDTPVCRAVIAEIGD 283
            Q HH +++   ADG +   R V+  + D
Sbjct: 249 AQAHHLSIIDVAADGQSAFTRTVLRMMQD 277


>gi|300311008|ref|YP_003775100.1| esterase/lipase/thioesterase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 48  ATTLLTESDIAY--GDAQLQRFDFYR------AQGAQRPLLVFIHGGYWQGGDKRDIGFI 99
           A+T L    +AY   D   Q+ D YR      A    RP++VF +GG W  G ++D  F+
Sbjct: 36  ASTYLKTEGVAYAGSDNARQQLDIYRPADTASAPPQGRPVVVFFYGGSWNQGSRKDYAFV 95

Query: 100 AAPYVKAGISVGVINYSLAPQARIEDMVAEVQAFLATIAQQADRLGIDVNRVSLMGHSAG 159
                  G+   + +Y L P+    D + +    +A   +    LG D  RV +MGHSAG
Sbjct: 96  GEALASRGVIAVLPDYRLYPEVSYPDFLQDSAQAVAWTLRSLQALGGDPQRVFVMGHSAG 155

Query: 160 GHLAAFVAAQ------ASALPVQ--AVFAISGVFDLVPL 190
            + AA +A        A A P Q      ++G +D +P+
Sbjct: 156 AYNAAMMALDARWLDAAGATPAQLRGWIGLAGPYDFLPI 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,991
Number of extensions: 33360
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)