BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0121.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphos...   680   0.0  
gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases p...    57   3e-09

>gi|300312948|ref|YP_003777040.1| bifunctional
           diaminohydroxyphosphoribosyl aminopyrimidine
           deaminase/5-amino-6-(5-phosphoribosylamino) uracil
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/353 (94%), Positives = 347/353 (98%)

Query: 20  MALALLQAGFGMLDTTPNPRVGCVIVKDRRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 79
           MALAL+QAGFGMLDTTPNPRVGCVIVKD+RIIGAGFTQPPGGNHAEIQAMADAAARGHDV
Sbjct: 1   MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60

Query: 80  RGATVYVTLEPCSHFGRTPPCADALVRAGVARVVAAIADPNPLVAGQGLARLQAAGIEVA 139
           RGATVYVTLEPCSHFGRTPPCADAL+RAGVARVVAAIADPNP+VAGQGLARLQAAGIEV+
Sbjct: 61  RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120

Query: 140 CGMLEEEAREINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITSQAARDDGHIW 199
           CG+LEEEAR+INIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWIT QAARDDGHIW
Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180

Query: 200 RARACAIMAGIGTIQKDDAQLTVRAIDTPRQPRRIVVDSKLIVSPEARVIQGGNTWVFTA 259
           RARACAIMAGIGTIQKDDAQLTVRAI+TPRQPRRIV+DSKLIVSPEARVIQGGNTWVFTA
Sbjct: 181 RARACAIMAGIGTIQKDDAQLTVRAIETPRQPRRIVIDSKLIVSPEARVIQGGNTWVFTA 240

Query: 260 TDDREKRAALEAEGAEVILLDNAEGKVDLPGLVRELGQRQINELHVEAGAKLNGALIRAG 319
           TDDR+KRAALEAEGAEVILL N +GKVDLPGL+RELGQRQINELHVEAGA+LNGAL+R G
Sbjct: 241 TDDRDKRAALEAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGALLREG 300

Query: 320 CVDELLVYLAPALIGDGRNMFELPPLEDLSGKIGIHFHEVKQVGPDLRILARF 372
           CVDELLVYLAP+LIGDGRNMFELPPLEDLSGKIGI FHEVKQVG DLRILARF
Sbjct: 301 CVDELLVYLAPSLIGDGRNMFELPPLEDLSGKIGIRFHEVKQVGADLRILARF 353


>gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases
           protein [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 19/155 (12%)

Query: 40  VGCVIVKDRRIIGAGFTQPPGGN----HAEIQAMADAAARGHDVR--GATVYVTLEPCSH 93
           VG V+VKD  +I  GF QP G +    HAEI A+  AA    + R  G  +YVTLEPC  
Sbjct: 40  VGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMALRRAAEILGNYRLPGCELYVTLEPCVM 99

Query: 94  FGRTPPCADALVRAGVARVVAAIADPNPLVAGQGLARLQAAGIE----VACGMLEEEARE 149
                 C+ A++ A +ARVV   ADP     G  L   +   +     +  G++ EE  +
Sbjct: 100 ------CSGAMMHARLARVVFGAADPKTGACGSVLNLFEQDQLNHHTALLGGVMAEECGQ 153

Query: 150 INIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVS 184
           +   F    R      R+++AA   G+ +  NG +
Sbjct: 154 LLKDFFAMRREQLKQQRLQAAA---GEGSQENGAA 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,135,312
Number of extensions: 46777
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)