BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0118.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembran...   331   3e-92

>gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembrane
           PilW protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  331 bits (849), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/278 (62%), Positives = 206/278 (74%), Gaps = 8/278 (2%)

Query: 5   ETGLTLVELMIALAIGLLVVLVAGTLLQQARAAYQEMDDAGRVEETARVALDHLQQVLRQ 64
           + GLTLVELM+ALA+GLLVVL AG LLQQAR +Y+++DDA RV ET R+ LDHLQQ LRQ
Sbjct: 10  QAGLTLVELMVALAVGLLVVLAAGVLLQQARESYEDIDDASRVNETGRLVLDHLQQALRQ 69

Query: 65  AGHLPL-------XLLPGLRGLDDSRQADALDPAAGLFGSSTGDGVNHSDLLMLGFFGAP 117
           AGHLP         L  GLRG+DDSRQA+  DPA G FG STGDG++HSDLLMLG FGA 
Sbjct: 70  AGHLPWEDLRQPPALAAGLRGVDDSRQAELHDPATGQFGGSTGDGLHHSDLLMLGLFGAA 129

Query: 118 RGSHAEISHCSGAQAPVGKPEEAARHWVIYYIAPGTGDEPELRCRYQGKNGNWTSDAIAR 177
             S A++ +CSGA AP G  EE+ARHW+IYYIA G+  EPELRCRYQG++G WTSDAIAR
Sbjct: 130 PASRAQVGNCSGAPAPTGPLEESARHWMIYYIAAGSSGEPELRCRYQGRHGVWTSDAIAR 189

Query: 178 GVEAMQLRYAIDSDGDGRPDRWLDASAMPGEAWGRVILVRIALLVRGVQRRPAAPGSETR 237
           GVEAMQLRYAIDSD DG PD+W DAS M    W +V+LV+IALLVRG ++RP    S  R
Sbjct: 190 GVEAMQLRYAIDSDSDGAPDQWRDASDMSAAQWSQVVLVQIALLVRGERQRPRDVVS-PR 248

Query: 238 SYDLFLPGRRSDPAWRVTETGQEQRRRAVFQGSVMLRN 275
            Y+L      + P W V     E RRRAVF+ +V+LRN
Sbjct: 249 RYELLAAPPPTPPGWTVDAAPGEDRRRAVFRATVLLRN 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 904,192
Number of extensions: 41002
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)