BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0116.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312942|ref|YP_003777034.1| hypothetical protein Hsero_3648...   305   3e-84
gi|300312941|ref|YP_003777033.1| hypothetical protein Hsero_3647...   130   8e-32

>gi|300312942|ref|YP_003777034.1| hypothetical protein Hsero_3648
           [Herbaspirillum seropedicae SmR1]
          Length = 205

 Score =  305 bits (780), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 153/193 (79%), Positives = 170/193 (88%)

Query: 83  FWFGPDWEQLPAHQVAERQKKLWWSKNPDIDAECRTRFAPLVQQAAANQLDDWTESPRSM 142
           FWFGPDW++LPAHQVAERQK LWWSKNP+ DA CRTRF PLVQ AAAN+L DW ++PRS+
Sbjct: 13  FWFGPDWDRLPAHQVAERQKALWWSKNPETDALCRTRFEPLVQDAAANRLSDWADTPRSL 72

Query: 143 LALILLLDQMPRNIYRDTAQAFAHDELARQCSHLALAMGLDAELPPLARVFLYLPLEHAE 202
           LAL+LLLDQ+PRNIYRDT QAFA DELARQC+HLALAMG++ ELP +ARVFLYLPLEH+E
Sbjct: 73  LALVLLLDQLPRNIYRDTPQAFAFDELARQCTHLALAMGVEQELPAIARVFLYLPLEHSE 132

Query: 203 DLDDQEYVVQLMGALAKAASAEDKATFDGYADYARRHHAVIARYGRFPHRNRILARESTP 262
           D+DDQ YVVQLMGALAKAA  EDK  FDGYADYARRH AVI R+GRFPHRNRIL R S+ 
Sbjct: 133 DIDDQHYVVQLMGALAKAAQGEDKPAFDGYADYARRHLAVIERFGRFPHRNRILGRASSA 192

Query: 263 EEVDFLKQPGSSF 275
           EE  FLKQPGSSF
Sbjct: 193 EESAFLKQPGSSF 205


>gi|300312941|ref|YP_003777033.1| hypothetical protein Hsero_3647
          [Herbaspirillum seropedicae SmR1]
          Length = 73

 Score =  130 bits (328), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/70 (85%), Positives = 65/70 (92%)

Query: 1  MQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVKVDGKLETRKTCKITVGQK 60
          MQKITFPLQ HPYVELNQLLKLCGLCDSGGAGKQLVA+G V+VDGK E+RKTCKIT GQK
Sbjct: 1  MQKITFPLQDHPYVELNQLLKLCGLCDSGGAGKQLVAEGHVRVDGKPESRKTCKITAGQK 60

Query: 61 VTLGDVQIPI 70
          V+LGDVQI +
Sbjct: 61 VSLGDVQITV 70


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 853,895
Number of extensions: 32894
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)