BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0113.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312929|ref|YP_003777021.1| membrane protein [Herbaspirillu...   422   e-119

>gi|300312929|ref|YP_003777021.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 294

 Score =  422 bits (1086), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/236 (94%), Positives = 228/236 (96%), Gaps = 4/236 (1%)

Query: 1   MKWEGNRESDNVEDRRGEDGGGGGGGGFGFGGRSIGLGTVAVALVASYFLGINPLTMLNL 60
           MKWEGNRESDNVEDRRGEDGGGGG G    GGRSIGLGTVAVALVASYFLGINPLTML+L
Sbjct: 1   MKWEGNRESDNVEDRRGEDGGGGGFGF---GGRSIGLGTVAVALVASYFLGINPLTMLSL 57

Query: 61  LSGGGSPAPVQQQAPAHKPSPNDQMARFVSTVLADTEDTWGQIFANNGKQYVQPKLVLFS 120
           LSGG SPAPVQQQAPAHKPSPNDQMARFV+TVLADTEDTW +IFA NGKQYV+PKLVLFS
Sbjct: 58  LSGG-SPAPVQQQAPAHKPSPNDQMARFVATVLADTEDTWDKIFAANGKQYVRPKLVLFS 116

Query: 121 GSTPTACGTGQTATGPFYCPGDQKVYIDLSFYELMKQRFKVSGNFAQAYVIAHEVGHHVQ 180
           GSTPTACGTGQ+ATGPFYCPGDQKVYIDLSFYELMKQRFKVSGNFAQAYVIAHEVGHHVQ
Sbjct: 117 GSTPTACGTGQSATGPFYCPGDQKVYIDLSFYELMKQRFKVSGNFAQAYVIAHEVGHHVQ 176

Query: 181 HLMGISDKVDAARRNATEKQANAMSVRLELQADCFAGVWAYHANQARHILEEGDIE 236
           HLMGISDKVDAARRNATEKQANAMSVRLELQADCFAGVWAYHANQARHILEEGDIE
Sbjct: 177 HLMGISDKVDAARRNATEKQANAMSVRLELQADCFAGVWAYHANQARHILEEGDIE 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 891,092
Number of extensions: 36695
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)