BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0107.p
         (478 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbasp...   802   0.0  

>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I
           [Herbaspirillum seropedicae SmR1]
          Length = 467

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/433 (88%), Positives = 407/433 (93%)

Query: 1   MYNHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCL 60
           M NHTFLWHDYETFGAVPRRDRP+QFAAVRTDAELNEIG PIM+YCKPAPDYLPDPVSCL
Sbjct: 1   MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60

Query: 61  ITGITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120
           ITGITPQHCLAHG+PEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
Sbjct: 61  ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120

Query: 121 REWANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALS 180
           REW NGCGRWDLLDVVRLTYALRP+GIQWP K+DGS+SFKLEHLSKANGLVHEAAHDALS
Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180

Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPAAKPFLHVSGMFPVANGCLAL 240
           DVRATIALARLIRQNNPRLFDFALAL+KKDKAAAEIGLP  +PFLH SGMFPVA+GCLAL
Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240

Query: 241 MWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKSIHLN 300
           MWPLGMHPTNKNEVIAWDL +DPSELA +DAATVRER+F+KRD++PEG+ RLPVKSIHLN
Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300

Query: 301 KSPMVVGSIKTLSAERAAQLNIDVDLALRHAEKAAALPDLGPLWREVYQREHEASPDVDE 360
           KSPMVVGS+KTLSAERAA+L+IDV+ ALRHA+KAAALPDL  LW EVYQRE E   DVDE
Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQRESEGPADVDE 360

Query: 361 DLYGGFIGNGDRRQLTQLRALPPQALAGASVAFDDMRLNEILFRYRARNFPETLSPEEAQ 420
           DLYGGFIGNGDRRQL QLRAL PQALA ASVAFDD RLNEILFRYRAR+FPETLSPEEAQ
Sbjct: 361 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 420

Query: 421 HWEEHRAARLFEG 433
           HWEEHRAA    G
Sbjct: 421 HWEEHRAAAPVRG 433


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,610,626
Number of extensions: 70620
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,198,455
Effective search space: 466198995
Effective search space used: 466198995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)