BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0099.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312915|ref|YP_003777007.1| hypothetical protein Hsero_3621...   242   6e-66

>gi|300312915|ref|YP_003777007.1| hypothetical protein Hsero_3621
           [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  242 bits (618), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MFEQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIA 60
           MFEQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIA
Sbjct: 19  MFEQIKIQRLSMSSIYKLLAVGTTFSLVPFSTLMGVLSLFGAQTITWDGKHLIGYDGLIA 78

Query: 61  SPFIGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKVEPVDNLDIDKLIRESEEAMATRD 120
           SPFIGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKVE VDNLDIDKLIRESEEAMATRD
Sbjct: 79  SPFIGLFLSAFITLFMGTMCCIGLWLYSLWRPLSLKVEAVDNLDIDKLIRESEEAMATRD 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 348,056
Number of extensions: 13893
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)