BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0097.p
         (583 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312914|ref|YP_003777006.1| glutaminyl-tRNA synthetase [Her...  1204   0.0  
gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase [Herba...    70   4e-13

>gi|300312914|ref|YP_003777006.1| glutaminyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 583

 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/583 (98%), Positives = 581/583 (99%)

Query: 1   MSNELKNGHTPAPSTNFLRGIIESDLVSGTYAERSSQDGEALPQVVTRFPPEPNGYLHIG 60
           MSNELKNGHTPAPSTNFLRGIIESDLVSG YA+RS+++GEALPQVVTRFPPEPNGYLHIG
Sbjct: 1   MSNELKNGHTPAPSTNFLRGIIESDLVSGVYAQRSNREGEALPQVVTRFPPEPNGYLHIG 60

Query: 61  HAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVKWLGFSWEHEGKSHLYY 120
           HAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVKWLGFSWEHEGKSHLYY
Sbjct: 61  HAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVKWLGFSWEHEGKSHLYY 120

Query: 121 ASNYFDVMYACAQALIRKGLAYVDEQNAEQMRENRGTLTEPGKDSPWRDRPAEESLRLFE 180
           ASNYFDVMYACAQALIRKGLAYVDEQNAEQMRENRGTLTEPGK+SPWRDRPAEESLRLFE
Sbjct: 121 ASNYFDVMYACAQALIRKGLAYVDEQNAEQMRENRGTLTEPGKNSPWRDRPAEESLRLFE 180

Query: 181 EMRDGKHPDGSMILRARIDMASPNMNLRDPAIYRIRHATHHNTGDKWRVYPMYTFAHPIE 240
           EMRDGKHPDGSMILRA+IDMASPNMNLRDPAIYRIRHATHHNTGDKWRVYPMYTFAHPIE
Sbjct: 181 EMRDGKHPDGSMILRAKIDMASPNMNLRDPAIYRIRHATHHNTGDKWRVYPMYTFAHPIE 240

Query: 241 DALENISHSICTLEFEDQRPFYDWLLEQLAEEGFFKKPLPHQYEFARLNLTYIITSKRKL 300
           DALENISHSICTLEFEDQRPFYDWLLEQLAEEGFFKKPLPHQYEFARLNLTYIITSKRKL
Sbjct: 241 DALENISHSICTLEFEDQRPFYDWLLEQLAEEGFFKKPLPHQYEFARLNLTYIITSKRKL 300

Query: 301 RQLVDEKIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKNNSWIDFSVLEGALRE 360
           RQLVDEKIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKNNSWIDFSVLEGALRE
Sbjct: 301 RQLVDEKIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKNNSWIDFSVLEGALRE 360

Query: 361 DLDPKAPRAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDTAHRHFPITKELWIER 420
           DLDPKAPRAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDTAHRHFPITKELWIER
Sbjct: 361 DLDPKAPRAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDTAHRHFPITKELWIER 420

Query: 421 EDFMEEPTKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVHCNYFEDSKSGTEGSS 480
           EDFMEEPTKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVHCNYFEDSKSGTEGSS
Sbjct: 421 EDFMEEPTKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVHCNYFEDSKSGTEGSS 480

Query: 481 NYKVKGNLHWVSADHALATEVRLYDRLFSDPHPDAGGKDFLAALNPNSKEVITAYLEPTL 540
           NYKVKGNLHWVSA+HALATEVRLYDRLFSDPHPDAGGKDFLAALNPNSKEVITAYLEPTL
Sbjct: 481 NYKVKGNLHWVSAEHALATEVRLYDRLFSDPHPDAGGKDFLAALNPNSKEVITAYLEPTL 540

Query: 541 KSAKPGEIYQFERHGYFVADRVDSTEGQPIFNRAVTLKDSWGK 583
           K+A+PGEIYQFERHGYFVADRVDST GQPIFNRAVTLKDSWGK
Sbjct: 541 KTAQPGEIYQFERHGYFVADRVDSTAGQPIFNRAVTLKDSWGK 583


>gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 44  QVVTRFPPEPNGYLHIGHAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSV 103
           QV TRF P P GYLH+G A++   ++  A  + G   +R +DT+ E+   E V  I++ +
Sbjct: 21  QVRTRFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPEAVQAIIEGM 80

Query: 104 KWLGFSWEH-EGKSHLYYASNYFDVMYACAQALIRKGLA---YVDEQNAEQMRE-NRGTL 158
           +WLG   EH EG    +Y     D        ++ +G A   Y   +  E MRE  R   
Sbjct: 81  QWLGL--EHDEGP---FYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAG 135

Query: 159 TEPGKDSPWRDRPAE 173
            +P  D  WR  P +
Sbjct: 136 EKPRYDGTWRPEPGK 150


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,013,737
Number of extensions: 88422
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 583
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,193,720
Effective search space: 588503960
Effective search space used: 588503960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)