BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0094.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312912|ref|YP_003777004.1| transmembrane sensor histidine ...   634   0.0  

>gi|300312912|ref|YP_003777004.1| transmembrane sensor histidine
           kinase-like ATPase [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/352 (88%), Positives = 331/352 (94%)

Query: 39  PTLVINLLCALAVTYLMRIGGTFYENLQVSMCIGLLAMLLINGTRLAIWGDGEPNKLGFL 98
           PTL+INL+CALAVTYL+RIG  FYENLQ+SMCIGLLAMLLING RL IWGD EPNKLGF 
Sbjct: 25  PTLLINLMCALAVTYLLRIGDGFYENLQISMCIGLLAMLLINGARLLIWGDDEPNKLGFA 84

Query: 99  AIIAVMAPLAVLLGRILASLLMDQPILNMVPEQSDNIIAVIVLTFLVCFGATVFYWNRQK 158
            ++AV+APLAVLLGR+LA+LL+ QP++++VPE SDNIIAV+VLTFLVCFGATVF+WNRQK
Sbjct: 85  VLLAVLAPLAVLLGRVLATLLLGQPVVSLVPEHSDNIIAVMVLTFLVCFGATVFFWNRQK 144

Query: 159 MAALQAHASQVEKQAVQAQLQMLQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQLVHY 218
           MA LQAHAS+VEK AV AQLQ LQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQLV Y
Sbjct: 145 MATLQAHASEVEKHAVLAQLQTLQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQLVQY 204

Query: 219 LRTTLSASRADSTSLQKEFDLIKAYLGLMSLRMGLRLSYTLQLPEHLGKLRLAPMLLQPL 278
           LRTTLSASRADS SLQ+EFDLIKAYLGLMSLRMGLRLSYTLQLP HLG+LRLAPMLLQPL
Sbjct: 205 LRTTLSASRADSCSLQQEFDLIKAYLGLMSLRMGLRLSYTLQLPSHLGRLRLAPMLLQPL 264

Query: 279 VENAIKHGLEPKVAGGNCTVRAAVHNDMLVLSVLDTGVGLPTSVSLNQPPAQKEPVIGMH 338
           VENAIKHGLEPKV GGNCTVRAAVHNDMLVLSVLDTGVGLPTSVSLNQPPAQKEPVIGMH
Sbjct: 265 VENAIKHGLEPKVDGGNCTVRAAVHNDMLVLSVLDTGVGLPTSVSLNQPPAQKEPVIGMH 324

Query: 339 FGLDNIRERLVTLYGPLAELIITHNVPAGAMAQITIPLKALKAAHRSSKNTR 390
           FGLDNIRERL TLYGPLAELIITHNVPAGAMAQITIPLK+LK+AHRS K  R
Sbjct: 325 FGLDNIRERLSTLYGPLAELIITHNVPAGAMAQITIPLKSLKSAHRSGKAGR 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 967,909
Number of extensions: 34790
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)