BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0092.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312910|ref|YP_003777002.1| glycerophosphoryl diester phosp...   381   e-107
gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester phosp...    57   1e-09

>gi|300312910|ref|YP_003777002.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  381 bits (978), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/245 (81%), Positives = 216/245 (88%)

Query: 50  MWPYPRILAHRGGGTLAPENTLAGFRCGLEHGYRAAELDVMLTRDEVPILMHDPQRGRTL 109
           MWPYP+ILAHRGGGTLAPENTLAGFR GL++GYRA E DVMLTRDEVPILMHDP+RGRTL
Sbjct: 1   MWPYPKILAHRGGGTLAPENTLAGFRAGLQYGYRAVEFDVMLTRDEVPILMHDPERGRTL 60

Query: 110 PGAGKIAESDWAELRDLEAGAWLDARFAGERISTLEQGLDFCLAEGIWMNVEIKPAAAEF 169
           PG+GKIAE+DWA LR+L+AG W D  FAGER+ TLEQ LDFC   GIWMNVEIKPA    
Sbjct: 61  PGSGKIAETDWAVLRELDAGTWRDPVFAGERLCTLEQALDFCQEHGIWMNVEIKPATPAA 120

Query: 170 ARRTGELTAQAVARRFAGKSGAALPVLSSFSFDALLAAKEAAPALPRGYLVDVIPEDWQA 229
           ARRT ELTAQAVARRFA  +GAALPVLSSFSF+ALLA +E AP LPRG+LV+VIP+DWQA
Sbjct: 121 ARRTAELTAQAVARRFARDAGAALPVLSSFSFEALLAVQETAPQLPRGFLVEVIPDDWQA 180

Query: 230 RLEQLQAVALHTNHKHLTPSLAAAVKAAGYGLFCYTVNDMARAEEIRQWGVDAFCTDRID 289
           RL QLQAVALHTNHKHLTP+LAAAVKAAGYGLFCYTVN+ ARA EI  WGVDAFCTDRID
Sbjct: 181 RLAQLQAVALHTNHKHLTPALAAAVKAAGYGLFCYTVNETARAAEITAWGVDAFCTDRID 240

Query: 290 LIAAD 294
           LI AD
Sbjct: 241 LIPAD 245


>gi|300311918|ref|YP_003776010.1| glycerophosphoryl diester
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 6/114 (5%)

Query: 56  ILAHRGGGTLAPENTLAGFRCGLEHGYRAAELDVMLTRDEVPILMHDPQRGRTLPGAGKI 115
           + +HR   T   EN+L G R  +  G    E+DV  T+D   +LMHD    RT  G G +
Sbjct: 47  VSSHRSCWTETSENSLDGIRRCIAEGIDIGEIDVRTTQDGALVLMHDQTVDRTTNGRGAV 106

Query: 116 AESDWAELRDLEA---GAWLDARFAGERISTLEQGLDFCLAEG-IWMNVEIKPA 165
            E   A+++DL     G    A     R+ TL+Q L   +A G I +N+++K A
Sbjct: 107 TELTLAQIQDLRLYTRGGRQGATLTSRRVPTLQQAL--AVARGRIVLNLDVKDA 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,031,886
Number of extensions: 45078
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)