BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0079.p
         (519 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312899|ref|YP_003776991.1| transcription elongation factor...  1019   0.0  

>gi|300312899|ref|YP_003776991.1| transcription elongation factor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 519

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/519 (99%), Positives = 517/519 (99%)

Query: 1   MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60
           MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR
Sbjct: 1   MSREILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFR 60

Query: 61  RWHVVPDEAGLQLPDQEILLFEAKDQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120
           RWHVVPDEAGLQLPDQE+LLFEAK+QFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR
Sbjct: 61  RWHVVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQR 120

Query: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180
           IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR
Sbjct: 121 IRDAEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDR 180

Query: 181 VRAYILRVDRGARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240
           VRAYILRVDR ARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV
Sbjct: 181 VRAYILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV 240

Query: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300
           YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV
Sbjct: 241 YTADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVV 300

Query: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360
           DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL
Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTL 360

Query: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPITEMLEIESFDEETVNELRNRARDALVTEA 420
           FMEKLDVDQEVADILVEEGFSTLEEIAYVPI EMLEIESFDEETVNELRNRARDALVTEA
Sbjct: 361 FMEKLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEA 420

Query: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480
           IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ
Sbjct: 421 IASEEGLEGMEEELINFEGLDRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERARQ 480

Query: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519
           LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR
Sbjct: 481 LIENAFEDVTDDEMKLIDSKYDERAKALQAKAWSAVEGR 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,511,792
Number of extensions: 63894
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,198,455
Effective search space: 515335650
Effective search space used: 515335650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)