BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0071.p (820 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 1207 0.0 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 1132 0.0 gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 390 e-109 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 332 9e-92 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 293 5e-80 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/807 (70%), Positives = 671/807 (83%), Gaps = 2/807 (0%) Query: 1 MNDRSTPLSTWFQALISQGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNN 60 M++ T LS + Q R+L++DS LG + LLPQR+VG ERLGRGY+YT+D+++T + Sbjct: 13 MDNVLTTLSALADTFVGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRD 72 Query: 61 HIELKKLVAEPVTLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRK 120 IELKKL+A+PVTLW++Q DY+P+HGYVHTARRLGSDGQ+ QI + WL+FLKYRK Sbjct: 73 DIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRK 132 Query: 121 DARIWQDKTAEDILAEVFDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEEG 180 DARIWQD A+DILA+VFD H ARGNYRFE+ T ALPRSYCTQYETDWHF QRLMEEEG Sbjct: 133 DARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEG 192 Query: 181 WYSYHEQKPDGSGHVLVITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSSA 240 WY+YHEQKPDGSGHVLVITDNT KP+ EQ FH GT DE +I+HWSASR L+S+ Sbjct: 193 WYAYHEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTR 252 Query: 241 LATRTDDYRAPSAEKSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQW 300 LATRTDDY++P +K TQ VL +HG LP +LEVYEY+G YSY KQ+ GDRQA++RVEQW Sbjct: 253 LATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQW 312 Query: 301 ESSMKRFHGVSGVRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVP 360 ESSMKRF GVSG R+L GRWF+L HPAH D +D QFML+AVEWFIENNLPLS Sbjct: 313 ESSMKRFMGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR 372 Query: 361 EFPGSLKPALDRFKATISRLESSRTGENELTGHCFNRFEVQRRKVPFRSPMEHPKPVMHP 420 +FPGSLKP LD FKA++ R + G N TGHCFNRFEVQRRK+P+RSP +H KPVMHP Sbjct: 373 DFPGSLKPQLDAFKASMGR-SNDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHP 431 Query: 421 QTAVVVGPAGEEIYTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRI 480 QTAVVVGP GEE++TDKLNRVKV+FRWDR NPGDE+ASCWVRVSYPNAGENWG V VPR+ Sbjct: 432 QTAVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRV 491 Query: 481 RQELIISFLNGDPDRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTSN 540 QELIISFLNGDPDRPVATGRLFN+EQ PQWHTDGRLSGLKSKEFGG+GFNQLVMDDT++ Sbjct: 492 GQELIISFLNGDPDRPVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTS 551 Query: 541 QNRLHLYSSHANAQLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARP 600 QNR+HLYSS +NAQLNLGYLV Q NER++FYGSGF+L+TDDYGA+V KGLYLS++ RP Sbjct: 552 QNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRP 611 Query: 601 GPHGTQLDTTEATNQLKAGAALTKNLSETASRAGAEPLAGSEELEALIDSTQDSYTEAGQ 660 GP GTQLD +EAT+ +KA A L + LS++ASRAGAE LA + L+ +D+T+D Y+ GQ Sbjct: 612 GPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALA-QDSLKDFVDATEDKYSGQGQ 670 Query: 661 SGANRFKQSVLVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKIS 720 ANRFK+ +L+ A+P+GIG+ T +G VH+ E TL++G++TSIA+GKSLLA+ EKIS Sbjct: 671 GSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKIS 730 Query: 721 LFAFNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFV 780 LFA NAG KLFAAKGKVE+QAQSDDL+LIAEKVARLLS +GRVEIHAKDEV+ISAGGSF+ Sbjct: 731 LFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFI 790 Query: 781 KINASGITQGTQGAWEAKAATHSMPGP 807 +IN++GITQGT G WEAKA+ HSMPGP Sbjct: 791 QINSAGITQGTPGKWEAKASLHSMPGP 817 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/802 (66%), Positives = 647/802 (80%) Query: 13 QALISQGDRLLRIDSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNNHIELKKLVAEPV 72 QA I+Q RLL++DS LG + LLPQR+V ERL GYE T+D+LAT+ I L++L+A+PV Sbjct: 13 QARITQHRRLLQLDSSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 73 TLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQDKTAED 132 TLWI+Q D P+HGYVHTA+RLGSDG++ FCQ+ + WL+FL++RKDARIWQDK ED Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 133 ILAEVFDAHPQARGNYRFELATQALPRSYCTQYETDWHFAQRLMEEEGWYSYHEQKPDGS 192 ILA+VF+ HPQARG+YRF+L PR YCTQYETDWHF QRLMEEEGW+++HEQ+ DGS Sbjct: 133 ILADVFNNHPQARGHYRFQLERPYTPRPYCTQYETDWHFVQRLMEEEGWFAHHEQREDGS 192 Query: 193 GHVLVITDNTHGLKPIKGEQAEFHTGGTADEAQKIVHWSASRSLSSSALATRTDDYRAPS 252 GHVLVITDNT L + + FH DE KI+HWSASR+LSS R+DDY++P Sbjct: 193 GHVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDDYKSPG 252 Query: 253 AEKSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQWESSMKRFHGVSG 312 +K + V+ ++G LP QLE+YEYTGAYS+ QEQG+RQA ++VEQWESSM+R+ VSG Sbjct: 253 MKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAVSG 312 Query: 313 VRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVPEFPGSLKPALDR 372 VR+L CGRWF LE HP H +P +RQF+++A++WF+ENNLPLS+ +FPGSLK AL Sbjct: 313 VRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQALDFPGSLKGALMA 372 Query: 373 FKATISRLESSRTGENELTGHCFNRFEVQRRKVPFRSPMEHPKPVMHPQTAVVVGPAGEE 432 FK +I R +NE TGHCFNRFEVQRRK+PFR H +PVM PQTA+VVGPA EE Sbjct: 373 FKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVMLPQTAIVVGPASEE 432 Query: 433 IYTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRIRQELIISFLNGD 492 +YTD L+R+KV+FRWDR NPG+E ASCWVRVSYPNAG+ WG + VPRI QE+I+SFLNGD Sbjct: 433 VYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGD 492 Query: 493 PDRPVATGRLFNEEQAPQWHTDGRLSGLKSKEFGGSGFNQLVMDDTSNQNRLHLYSSHAN 552 PDRPV TGRLFN EQ PQWHT+GRLSG+KSKEFGG+GFNQ+VMDDT QNR+HLYS++ + Sbjct: 493 PDRPVVTGRLFNAEQRPQWHTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTH 552 Query: 553 AQLNLGYLVRQVGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARPGPHGTQLDTTEA 612 AQLNLG+LV Q GNER+SF+GSGF+L+TD YGAIV KGLY+ST+ RPG GTQLD EA Sbjct: 553 AQLNLGHLVSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREA 612 Query: 613 TNQLKAGAALTKNLSETASRAGAEPLAGSEELEALIDSTQDSYTEAGQSGANRFKQSVLV 672 T QLK+GA L++ LSETA++AGAEPLAG E L ID+TQ Y + Q+ ANRF+Q++L+ Sbjct: 613 TGQLKSGANLSRTLSETAAKAGAEPLAGQEALRDFIDATQADYEDPSQAQANRFQQAILL 672 Query: 673 AASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKISLFAFNAGAKLFA 732 AASP GIG+TTPKG H HAG E+TLS+G +TSIA GKSLLAS AEKISLFAF AG KLF+ Sbjct: 673 AASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKAGIKLFS 732 Query: 733 AKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFVKINASGITQGTQ 792 AKGKVEVQAQSDDLELIAEKVARLLS +GRVEI AK+EV+I+AGGSF+++NASGITQGT Sbjct: 733 AKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGITQGTS 792 Query: 793 GAWEAKAATHSMPGPGXPVHEF 814 GAWEAKA TH+MPGP +E Sbjct: 793 GAWEAKAGTHAMPGPTTLAYEM 814 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust. Identities = 270/826 (32%), Positives = 417/826 (50%), Gaps = 66/826 (7%) Query: 18 QGDRLLRI-----DSPLGTNALLPQRVVGRERLGRGYEYTVDVLATNNHIELKKLVAEPV 72 Q +R+L++ D+P LL R+ E L R Y YT+++L+ + HI L ++ + + Sbjct: 16 QHNRILQLFFINDDAP--DAELLINRLEASEALSRDYVYTLELLSDDAHIPLDAMMGKLL 73 Query: 73 TLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQDKTAED 132 + + ++ GYV L SDG + F + +V WL FL R + RI+ + E Sbjct: 74 RVALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASRHNNRIFHHLSLEG 133 Query: 133 ILAEVFDAHPQARGNYRFELATQALPRSYCTQY-ETDWHFAQRLMEEEGWYSYHEQKPDG 191 + A +F A+P + +L R+ Q+ E+D + R E+ GW+ ++E + DG Sbjct: 134 LSAAIFRAYPM-HARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDAGWHYHYEHQADG 192 Query: 192 SGHVLVITDNTHGLKPIKGE-QAEFHTGGTADEAQKIVHWSASRSLSSSALATRTDDYRA 250 H L ++D++ KPI G Q F G A E + WSA R S+ + D++A Sbjct: 193 --HQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQFQPSSTRLSSYDFKA 250 Query: 251 PSAEKSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQGDRQAKIRVEQWESSMKRFHGV 310 ++ ++P L G + Q+E YEY GAY + ++ GDRQ+++R+E++E++ + F G Sbjct: 251 ARPQE-VEVPTLNKQGAVL-QVEHYEYAGAYGFANRDDGDRQSRLRMEEFEAAAQVFEGT 308 Query: 311 SGVRSLECGRWFSLEGH---PAHTQDPAEDRQFMLVAVEWFIENNLPLSNNVPEFPGSLK 367 R L+ GR F L GH A + D D + ++++VE NN + P F Sbjct: 309 GNCRFLQPGRTFRLTGHFSGSAASHDHDRDPELLIISVEHSATNNYLQDSETPPFYA--- 365 Query: 368 PALDRFKATISRLESSRTGENELTGHCFNRFEVQRRKVPFR---SPMEHPKPVMHPQTAV 424 NR R+++P+R S P ++ QTA Sbjct: 366 ----------------------------NRVRCVRKRIPWRPGRSYYSQPTALLGIQTAT 397 Query: 425 VVGPAGEEIYTDKLNRVKVRFRWDRQNPGDERASCWVRVSYPNAGENWGGVHVPRIRQEL 484 VVGPAGE ++ D+ RVKV+F WD+ DER+S W+RV+ +G G V VPRI Q + Sbjct: 398 VVGPAGENLHVDEYGRVKVQFHWDQIGRNDERSSAWLRVASSWSGGEQGLVSVPRIGQLV 457 Query: 485 IISFLNGDPDRPVATGRLFNEEQAPQWH--TDGRLSGLKSKEFG-------GSGFNQLVM 535 I+ +L G PDRP+ TG + N+ P W + LSG++S+E G ++ Sbjct: 458 IVQWLGGHPDRPIITGSVVNQLNMPPWTLPSQSALSGMRSRELAPRTGNAPGGRSGHVLF 517 Query: 536 DDTSNQNRLHLYSSHANAQLNLGYLVR-QVGNERQSFYGSGFSLNTDDYGAIVADKGLYL 594 DDT + + S ++QL LG++ R + RQ G GF L TD +G + A +GL L Sbjct: 518 DDTHEAIQTQVRSDAFDSQLALGHITRIERHAGRQDARGEGFELRTDAHGVVRAAQGLLL 577 Query: 595 STFARPGPHGTQLDTTEATNQLKAGAALTKNLSETASRAGAEPL-AGSEELEALIDSTQD 653 ++ RP H D E +L ++LS+ A A+ A + I + D Sbjct: 578 TSEPRPKAHRHTTDIGETVARLTQARGTVESLSKLAQEHEAQDKNADQYDAAQAIKAQND 637 Query: 654 SYTEAGQSGANRFKQSV---LVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGKS 710 + G + RF + LV +SPSGI ++ H+ + L+AG + S+A GKS Sbjct: 638 AIKGDGAAKGGRFPELTEPHLVLSSPSGIEASSGASTHLASAEHAALTAGSHISLAAGKS 697 Query: 711 LLASAAEKISLFAFNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDE 770 ASAAEK+SL A+ GAKL AA G+VE+QAQ+D +EL+A+KV ++S + + AK Sbjct: 698 FFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIISTRDWINLKAKKG 757 Query: 771 VIISAGGSFVKINASGITQGTQGAWEAKAATHSMPGPGXPVHEFPG 816 + ++ GGS + I A GIT TQGA AA H GP EFPG Sbjct: 758 IRLNGGGSELVI-AEGITGFTQGAHHVHAADHQTLGPQGRPAEFPG 802 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 332 bits (850), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 264/877 (30%), Positives = 413/877 (47%), Gaps = 103/877 (11%) Query: 12 FQALISQGDRLLRIDSPLGTNALLPQ-----RVVGRERLGRGYEYTVDVLATNNHIELKK 66 F +SQ RL+ + + +A LP+ R G E + + + +D L+ + ++LK+ Sbjct: 17 FGTGLSQNARLITMTT--AQSAGLPETLAVERFEGEESVNDNFRFDIDALSISTDLDLKQ 74 Query: 67 LVAEPVTLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRKDARIWQ 126 + ++L + Q+ HGY A LG+DG + ++ + S+L FL R D+ ++Q Sbjct: 75 FIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRHDSFLFQ 134 Query: 127 DKTAEDILAEVFDAHPQARGNYRFELATQALPRSYCTQY-ETDWHFAQRLMEEEGW---- 181 D T DI A V +PQA N+ E+ R CTQY ETD+ F +R++ EG Sbjct: 135 DMTVTDIAAAVLKEYPQA--NFSLEVTQTLAKRDICTQYRETDYAFLRRILASEGLNFRF 192 Query: 182 -------YSYHEQKPDGSGHVLVITDNTHGLKPIKG--EQAEFHTGGTADEAQKIVHWSA 232 H+Q + H LVI D + G E FH + + I ++A Sbjct: 193 EHEQDDATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAAMEASDAITDFAA 252 Query: 233 SRSLSSSALATRT---DDYRAPSAEKSTQLPVLADHGNLPDQLEVYEYTGAYSYDKQEQG 289 RS+ + +A + + +PS E+ + L D G LP L VY+ TG + Q+ Sbjct: 253 VRSVRPNGVALASWHPEKLSSPSHEEGSTL----DAGELP-SLPVYDGTGQQDFADQDAA 307 Query: 290 DRQAKIRVEQWESSMKRFHGVSGVRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVEWFI 349 A++ ++ E KRF G R L G F+L H + P + F +V+V Sbjct: 308 AAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERY---PEGENAFKVVSVRHAA 364 Query: 350 ENNLPLSNNVPEFPGSLKPALDRFKATISRLESSRTGENELTGHCFNRFEVQRRKVPF-- 407 NN+ S N+ AL A R + + G N F R VP Sbjct: 365 RNNV--SANITRILAPAAGALFGGSAAAERDDDLQAGTYR------NSFTAIRDSVPMVP 416 Query: 408 RSPMEHPKPVMH-PQTAVVVGPAGEEIYTDKLNRVKVRFRWDR---QNPG---------- 453 + E KP QTA+V G A + TD+ +RVKV+F W R NPG Sbjct: 417 AAIAERLKPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDD 476 Query: 454 -------DERASCWVRVSYPNAGENWGGVHVPRIRQELIISFLNGDPDRPVATGRLFNEE 506 ++ + W+RV+ +G NWG +PR+ E+++ F+ GD DRPV +L+N Sbjct: 477 KDGNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNGS 536 Query: 507 QAPQW--------HTDGRLSGLKSKEFGGSGFNQLVMDDTSNQNRLHLYSSHANAQLNLG 558 AP + + G +SG S GSGFNQ V+DDT +Q R+ L SS A +QLNLG Sbjct: 537 DAPPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQLNLG 596 Query: 559 YLVRQ--VGNERQSFYGSGFSLNTDDYGAIVADKGLYLSTFARP----GPHGTQLDTTEA 612 +LV Q G +R S+ G GF L +D +G + +GL LST ARP GTQ+D A Sbjct: 597 HLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGA 656 Query: 613 TNQLKAGAALTKNLSETASRAGA----EPLAGSEELEALIDST-----------QDSY-- 655 QLK +L + +S++A++ A + L + ALID + QD+ Sbjct: 657 IAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDALKS 716 Query: 656 ------TEAGQSGANRFKQSVLVAASPSGIGMTTPKGAHVHAGSEVTLSAGENTSIATGK 709 T+A Q +F ++ ++ SPS I T+ ++A + + + + Sbjct: 717 DGSTRNTDAAQP-VEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAAD 775 Query: 710 SLLASAAEKISLFAFNAGAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKD 769 + A+A + S ++ + G + FAA G V +QA +D LE++A+K + S N +EI A+ Sbjct: 776 TASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQ 835 Query: 770 EVIISAGGSFVKINASGITQGTQGAWEAKAATHSMPG 806 ++++ AG + V + IT G + K ATH+ PG Sbjct: 836 KIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPG 872 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 293 bits (749), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 277/918 (30%), Positives = 415/918 (45%), Gaps = 144/918 (15%) Query: 17 SQGDRLLRIDSPL----GTNALLPQRVVGRERLG------------RGYEYTVDVLATNN 60 SQ R++R+ +PL G +AL+ +R+ E++G GY + L+ N Sbjct: 14 SQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAGYRLQLSCLSLNA 73 Query: 61 HIELKKLVAEPVTLWIKQSHRDYSPVHGYVHTARRLGSDGQVLFCQIVVVSWLNFLKYRK 120 I L+KL+ +PV L + + HG+V R G++G + + + WL+FL++R+ Sbjct: 74 DISLRKLLGQPVLLELD-TDGGARAFHGHVTACRMEGANGGMARYLLTIEPWLSFLRHRR 132 Query: 121 DARIWQDKTAEDILAEVF-DAHPQARGN--YRFEL--ATQALPRSYCTQY-ETDWHFAQR 174 D+ ++QD +A I+ VF D Q R +R +L A+ RS TQY ETD F R Sbjct: 133 DSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQYQETDLAFVTR 192 Query: 175 LMEEEGWYSYHEQKPDGSG-----HVLVITDNTHGLKPIKGEQAEFHTGGTADEAQKIVH 229 LM EEG + Y E + D + H +VI D+ KP F I Sbjct: 193 LMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQTNAVMAQDNIDR 252 Query: 230 WSASRSLSSSALATRTDDYRAPSAEKSTQLPVLADHG-NLPDQLEVY--EYTGAYSYDKQ 286 W + R ++A+ T DYR + ++ A G N D+L + + G Y + Sbjct: 253 WRSVRRWQTNAVEILTWDYRQTAVRAAS----TASSGENAHDKLVLTSRDAPGQYINESP 308 Query: 287 EQGDRQAKIRVEQWESSMKRFHGVSGVRSLECGRWFSLEGHPAHTQDPAEDRQFMLVAVE 346 EQ RQA +++ E K F G VRS G F+L + D +D QF+L+ V Sbjct: 309 EQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLT--GHYDHDGGDDDQFVLLRVV 366 Query: 347 WFIENNLP--LSNNVPEFPGSLKPALDRFKATISRLESS-RTGENELTGHCFNRFEVQRR 403 NNL L V G + LD S L+++ R+ + + NRFE R Sbjct: 367 HQAHNNLSADLKAGVTALLGQAQ--LDDHDHKGSLLDTALRSADTQARPVYRNRFEAIRN 424 Query: 404 KVPFRSPME-------HPKPVMH-PQTAVVVGPAGEEIYTDKLNRVKVRFRWDRQN---- 451 K+P+R + +PKP H Q+AVVVG G+ ++TD+ NR++V+F W R Sbjct: 425 KIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNRIRVQFHWQRGERSHS 484 Query: 452 -------------PGDERASCWVRVSY---PNAGENWGGVHVPRIRQELIISFLNGDPDR 495 P +E+A WVRV P AG NWGG VPR+ QE++I F+ GD DR Sbjct: 485 GLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDIDR 544 Query: 496 PVATGRLFNEE-------------------QAPQWHTDGR--------LSGLKSKEF--- 525 PV G L+N AP W LSG+K++ Sbjct: 545 PVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQALSAS 604 Query: 526 --GGSGFNQLVMDDTSNQNRLHLYSSHANA-----QLNLGYLVRQVGNERQSFYGSGFSL 578 GG G+NQLV DD+ Q R L HA+A +LNLG L +Q N+R + G GF L Sbjct: 605 QSGGGGYNQLVFDDSPGQARAAL-QQHADAHDGASELNLGLLRQQTDNQRLATTGQGFEL 663 Query: 579 NTDDYGAIVADKGLYLSTFARPGPHGTQLDTTEATNQLKAGAALTKNLSETASRAGAEPL 638 T A+ A +GL +ST QLD T+ +QL A + L+ETA + A L Sbjct: 664 KTLYSAALRAGQGLLVST---EKSISAQLDMTQGLSQLSESAQKQQQLAETAQKHNAR-L 719 Query: 639 AGSEE------LEAL------IDSTQDSYTEAGQSGANRFKQSV---------LVAASPS 677 G + +EA+ + +TQ + T + S + L +SP+ Sbjct: 720 EGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTAFSAPQLQLSSPA 779 Query: 678 GIGMTTPKGAHVHAGSEVTLSAGENTSIATGKSLLASAAEKISLFAFN-----------A 726 GI TP A + AG +++AG++ + +L + ISLF + Sbjct: 780 GIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQET 839 Query: 727 GAKLFAAKGKVEVQAQSDDLELIAEKVARLLSRNGRVEIHAKDEVIISAGGSFVKINASG 786 G L AA GKV VQ+Q+ L + K + S V + K V ++A G+++++ Sbjct: 840 GMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLAAQGAWLRLEGGN 899 Query: 787 ITQGTQGAWEAKAATHSM 804 I GA E +A+ + Sbjct: 900 IEVHGPGAMEFRASAKEL 917 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,712,374 Number of extensions: 117869 Number of successful extensions: 345 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 11 Length of query: 820 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 727 Effective length of database: 1,179,515 Effective search space: 857507405 Effective search space used: 857507405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)