BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0070.p (509 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313607|ref|YP_003777699.1| hypothetical protein Hsero_4322... 685 0.0 gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021... 276 4e-75 gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024... 257 1e-69 >gi|300313607|ref|YP_003777699.1| hypothetical protein Hsero_4322 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/512 (64%), Positives = 398/512 (77%), Gaps = 6/512 (1%) Query: 1 MSTPDNSYAVCHIVPDRIIPIIFIPGVMGSNLKGIGTAKNIRWRLDGASSMLGWLTRGPI 60 +S+PD+SYAVCH++PDR+IP+IF+PGVMGSNLKGIG A +RWRLD SML WLTRGP Sbjct: 26 LSSPDDSYAVCHMIPDRVIPVIFVPGVMGSNLKGIGDADGVRWRLDSEFSMLMWLTRGPA 85 Query: 61 ERKRYLTPETMTVDDGGTLPEGTSQHKDELKRRGWGEVGAMSYAPFLVWLENALSDFSNP 120 +RKRYLTP+ M VDD GT P GT+QH +ELKRRGWGEVGAMSY FLVWLENAL+DF+N Sbjct: 86 KRKRYLTPKKMVVDDDGTRPSGTAQHGEELKRRGWGEVGAMSYGDFLVWLENALNDFTNT 145 Query: 121 HGGERDRLIDRPIGASKGESALRKDEVALSYRYRFPVHACGYNWLDSNAIAAKRLQQRIN 180 GG RD LI R +G+ K + AL K EVALSYRYRFPVHA GYNWLDSN +AK+L++RIN Sbjct: 146 KGGHRDLLIGRTLGSMKSDEALLKAEVALSYRYRFPVHAFGYNWLDSNDASAKQLRERIN 205 Query: 181 EVIARYKGERKQCEKVILVTHSMGGLVARYCSEVLGMSDKIFGIVHGVMPSIGAAAVYRR 240 VIARYK E+K+CEKVILVTHSMGGLVARYCSEVLGMSDKI GIVHGVMP+IGAAAVYRR Sbjct: 206 SVIARYKKEKKRCEKVILVTHSMGGLVARYCSEVLGMSDKILGIVHGVMPAIGAAAVYRR 265 Query: 241 FKSGTEGDWIAAKILGEDAAEMTAVLSGAPGPLQLLPTQEYGNNWLKINDGKTVFSFPQR 300 FKSGTEG W+A K+LGEDAAEMTAVLS APGPLQLLPT EYGN WL+I+ G TV S P+ Sbjct: 266 FKSGTEGGWLATKVLGEDAAEMTAVLSSAPGPLQLLPTPEYGNGWLRIDGGSTVVSLPRN 325 Query: 301 GDPYEEIYTIRGKWWSMCEEDLISPVVPALGQTKPQAKLDQDWIKFATIISERVETFHKS 360 DPY EIYT+RG+WWSMCE+ LI+P L ++ + ++D DW F+ +I+ +V+TFH+ Sbjct: 326 NDPYYEIYTVRGRWWSMCEDHLITPRTTMLSASQKR-EIDADWADFSDVINSKVKTFHQE 384 Query: 361 IQGKYHPNTYAFYGSSPRFLSYGTVMWKGGTTWGE---TWFTSRKANTLNAKMTNEDNIH 417 I G+YHPNTYAF+GS F +YGTV W+ TT+ + +AK+ + Sbjct: 385 ITGEYHPNTYAFFGSDRHFKAYGTVQWR--TTFQSPRRPPIPRPNKDVFDAKLNFYGELG 442 Query: 418 TSRSLAAPLEGEGWKKGVHQVFTISGPDENGDGTVPHRSGIHPKDSPCVKSIVEVAVGHE 477 +R+ P + ++VF IS PDE+GDGTVPHRSGI PK+ P +KS++ ++VGHE Sbjct: 443 ETRTALYPHGMSAGQIAPNEVFRISEPDEDGDGTVPHRSGIAPKEHPGMKSLLRISVGHE 502 Query: 478 PAYKDSRAAMQFTLRAIVRIAQAVKGTSLAYE 509 AYKDS A +FTLRAIV+I QAVKGT+L YE Sbjct: 503 SAYKDSDIAREFTLRAIVQIVQAVKGTTLDYE 534 >gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1] Length = 576 Score = 276 bits (705), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 190/552 (34%), Positives = 283/552 (51%), Gaps = 83/552 (15%) Query: 9 AVCHIVPDRIIPIIFIPGVMGSNLKGIGTAKNIRW---RLDGASSMLGW--LTRGPIERK 63 A+C PD ++PI+F+PG+MG+ LK G K W S +L + L R P +R+ Sbjct: 35 ALCLTTPDVVVPILFVPGIMGTRLKVTGRDKGPAWFPPESTWESLVLAFKHLVRTPADRQ 94 Query: 64 RYLTPETMTVD-DGGTLPEGTSQ----------HKDELKRRGWGEVGAMSYAPFLVWLEN 112 R L P+T VD DG P+ TS+ + +K RGWG++ A SY L LE Sbjct: 95 RLLNPDTTEVDEDGPASPDDTSKTLLSLAPGNTDAERIKWRGWGQLHADSYLGILSMLET 154 Query: 113 ALSDFSNPHGGE-------RDRLIDR----PIGASKGESALRKDEVALSYRYRFPVHACG 161 +++ +P ++ ++DR +GA K L +D + + +PVHA G Sbjct: 155 SMAMIFDPASQGTLLTSRWKELVMDRQDAAKLGAQKPFVPLEEDHLRDAAELLYPVHAVG 214 Query: 162 YNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVILVTHSMGGLVARYCSEVLGMSDKI 221 YNWL SN ++ +RL I + A Y+ + K CE+VILVTHSMGGLVAR C+++ GM+++I Sbjct: 215 YNWLQSNKVSGQRLAGEIERITAYYRSKGKSCEQVILVTHSMGGLVARACAQLPGMAERI 274 Query: 222 FGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGEDAAEMTAVLSGAPGPLQLLPTQEY 281 G+VHGVMP+IGA A Y+R ++G EG +A +LG +AA+ TAV++ APGPL+LLPT +Y Sbjct: 275 LGVVHGVMPAIGAPATYKRIRAGFEG--MAQVVLGRNAADCTAVMANAPGPLELLPTAQY 332 Query: 282 GN-------NWLKIN--------DGKTVFSFPQRGDPYEEIYTIRG-KWWSMCEEDLISP 325 +WL+ + + + SF GDPY EIY WW + E+LI P Sbjct: 333 KTWTNQGERHWLRTSYRAIGQRGMPEEMDSFLGEGDPYAEIYLNNTLDWWKLVREELIDP 392 Query: 326 VVP-----ALGQTKPQAKLD---QDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSP 377 A + K A+ D D+ +FA + ++ T H+ I+ +YHPNTYA+Y + P Sbjct: 393 AGKEDKERARSENKVLAREDAKSSDFEQFAKRM-DKALTLHQQIEDQYHPNTYAYYAADP 451 Query: 378 RFLSYGTVMWKGG-TTWGETWFTSRKANTLNAKMTNEDNIHTSRSLAAPLEGEGWKKGVH 436 + ++ + WK G G+ + LN + H R Sbjct: 452 QQPAWNEINWKCGPMVPGDPAKAQLAEDDLNGMLELRFGEHHRR---------------- 495 Query: 437 QVFTISGPDENGDGTVPHRSGIHPKDSPCV--------KSIVEVAVGHEPAYKDSRAAMQ 488 FT+ GDGTVP SG PK P V K + H+ +Y +++ A Sbjct: 496 -FFTLQDGTGPGDGTVPAESGGAPK--PHVVQLFKHEGKQKSHDSYDHQFSY-NAKIAQA 551 Query: 489 FTLRAIVRIAQA 500 TL +I+RI + Sbjct: 552 VTLYSIIRIVSS 563 >gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 257 bits (657), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 176/514 (34%), Positives = 267/514 (51%), Gaps = 77/514 (14%) Query: 9 AVCHIVPDRIIPIIFIPGVMGSNLKGIGTAKNIRW-RLDGA----SSMLGWLTRGPIERK 63 A+C PD +IPI+F+PG+MG+ LK G K+ W DG L + R +R+ Sbjct: 39 ALCLTTPDVVIPIVFVPGIMGTRLKVKGRIKDAAWFPPDGGWESLVLALRHIGRTAADRQ 98 Query: 64 RYLTPETMTVDDGG-TLPEGTSQ----------HKDELKRRGWGEVGAMSYAPFLVWLEN 112 R L P T VDD G P+ S+ + +K RGWG++ A SY L LE+ Sbjct: 99 RLLNPATTEVDDDGPAFPDDISKTLLGFAPGKTDAERIKWRGWGQLHASSYLSILSLLES 158 Query: 113 ALSDFSNPHGGER-------DRLIDR----PIGASKGESALRKDEVALSYRYRFPVHACG 161 +++ +P + D ++ R +GA K L++ ++ + + +PVHA G Sbjct: 159 SMALIFDPASQGKKLTSHWQDLVMSRQDAAKLGAQKPFKPLQERQLQDAAEFLYPVHAVG 218 Query: 162 YNWLDSNAIAAKRLQQRINEVIARYKGERKQCEKVILVTHSMGGLVARYCSEVLGMSDKI 221 YNWL SN ++A+RL I + A Y+ + + CE+VI+VTHSMGGLVAR C+++ M+++I Sbjct: 219 YNWLQSNKVSAQRLASEIERITAYYRSKGRSCEEVIVVTHSMGGLVARACAQLPEMAERI 278 Query: 222 FGIVHGVMPSIGAAAVYRRFKSGTEGDWIAAKILGEDAAEMTAVLSGAPGPLQLLPTQEY 281 G+VHGVMP+IGA A Y+R ++G EG I +LG + AE TAV++ APGPL+LLPT +Y Sbjct: 279 LGVVHGVMPAIGAPATYKRIRAGFEG--IGQVVLGRNGAECTAVMANAPGPLELLPTAQY 336 Query: 282 GN-------NWLKIND--------GKTVFSFPQRGDPYEEIY-TIRGKWWSMCEEDLISP 325 +WL+++ + + SF GDPY +IY WW + EDL++P Sbjct: 337 KTWTNQGERHWLRVSYLGIGQRGLPEEMESFLGEGDPYAKIYLNNTADWWKLIREDLVNP 396 Query: 326 V--VPALGQTKPQAKLD-----QDWIKFATIISERVETFHKSIQGKYHPNTYAFYGSSPR 378 T+ + L D+ ++A + ++ HK I +YHP TYA+Y + P+ Sbjct: 397 AGREDRERNTRTERALHGNLRRPDFDRYAQNL-QKASELHKLIHQRYHPRTYAYYAADPQ 455 Query: 379 FLSYGTVMWKGGTTWGETWFTSRKANTLNAKMTNEDNIHTSRSLAAPLEGE---GWKKGV 435 S+ V WK ++ D+I T++ L GE +KK + Sbjct: 456 RPSWNEVQWK-------------------CPVSLPDDIKTAKHRDDNLNGEIFLAFKKDI 496 Query: 436 HQVFTISGPDENGDGTVPHRSGIHPKDSPCVKSI 469 + F + P GDGTVP SG P +P V I Sbjct: 497 ARRFVLQDPSGPGDGTVPAESGAAP--TPYVLQI 528 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,705,053 Number of extensions: 75151 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 3 Length of query: 509 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 420 Effective length of database: 1,198,455 Effective search space: 503351100 Effective search space used: 503351100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)