BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0068.p (664 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310211|ref|YP_003774303.1| bacteriophage replication A pro... 1225 0.0 gi|300311674|ref|YP_003775766.1| bacteriophage replication prote... 395 e-111 >gi|300310211|ref|YP_003774303.1| bacteriophage replication A protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 1225 bits (3169), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/665 (88%), Positives = 623/665 (93%), Gaps = 2/665 (0%) Query: 1 VESQQFAGELARIPLKWRGRVVSQALELMSVWHWNKIFEPVAVQFVREFAEQYVPAGVDL 60 ES QFA EL RIPLKWRGRVVS+ALELMSVWHW +IFEPVAV FVREFA++YVPAG+DL Sbjct: 18 TESPQFAQELKRIPLKWRGRVVSEALELMSVWHWRRIFEPVAVDFVREFADKYVPAGIDL 77 Query: 61 SQDDADICATAEKAAENVKEVLWKAISDTHARDLIEQECSDYGIDMPEVDDDDLRAIIAR 120 SQDDADICATAE+AA+NVK++LWKAISDTHARD+IEQECSDYGID+PEVDDDDLRAIIAR Sbjct: 78 SQDDADICATAERAADNVKKMLWKAISDTHARDIIEQECSDYGIDVPEVDDDDLRAIIAR 137 Query: 121 VVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVLSRLAQNRRNAAALEATI 180 VVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVL+R+AQN+RNAAALEAT+ Sbjct: 138 VVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVLARMAQNKRNAAALEATM 197 Query: 181 VRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAIAKECNDQGLFLTWSCPSRFHA 240 VRNEAGQEFSIAELAEKTTANK IRRGELMLRINGFE IA++C D GLFLTWSCPSRFH Sbjct: 198 VRNEAGQEFSIAELAEKTTANKAIRRGELMLRINGFEMIARDCGDTGLFLTWSCPSRFHR 257 Query: 241 TLHTGKPNPKYDGSDPRTANKYLGKMTALARSALARRGIGLYGFRIAEPHHDGCPHWHML 300 TLH+GKPNPKYDGSDPRTANKYLGK+TALARSALARRGIGLYGFRIAEPHHDGCPHWHML Sbjct: 258 TLHSGKPNPKYDGSDPRTANKYLGKVTALARSALARRGIGLYGFRIAEPHHDGCPHWHML 317 Query: 301 VFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGEPGAFKRRLDVKRIDWAKGSAAGYI 360 VFVRAL YTTPHVKDVASRAIRVMKRYAWRVDRGEPG+FKRRLDVKRIDWAKGSAAGYI Sbjct: 318 VFVRALPGYTTPHVKDVASRAIRVMKRYAWRVDRGEPGSFKRRLDVKRIDWAKGSAAGYI 377 Query: 361 AKYVAKNIDGVADHKTKEGYLITTDMAGDRELTPSARVEAWAARWGIRQFQQWGGAPVSV 420 AKYVAKNIDGVADHKTKEGY++TTD AGD ELTPSARVEAWAARWGIRQFQQWGGAPVS+ Sbjct: 378 AKYVAKNIDGVADHKTKEGYVVTTDTAGDYELTPSARVEAWAARWGIRQFQQWGGAPVSI 437 Query: 421 WRELRRVPADMLTEAPPAMAAAWNAVQKVEGEKRACWASYLRAQGGAIVKRDDLMVTLAK 480 WRELRRVPADM+ EAPPAMAAAW+AVQKVEGEKRACWASYLRAQGGA+VKRDDLMVTLAK Sbjct: 438 WRELRRVPADMMQEAPPAMAAAWDAVQKVEGEKRACWASYLRAQGGALVKRDDLMVTLAK 497 Query: 481 ETKTVSGRYEECERVMPYGVQCRQMVGVVFKSVRHTWTPVQGHDARASAGSGFPWTRVNN 540 ETKTV+GRYEE ERVMPYGVQCRQM GVVFKSVRHTW P+QG +ARASAG GFPWTRVNN Sbjct: 498 ETKTVAGRYEERERVMPYGVQCRQMAGVVFKSVRHTWIPIQGTEARASAGLGFPWTRVNN 557 Query: 541 CTRPAGTDFEADASFASKAAPVPVMFKPDQAAQIDHAWLALGACPWPRPVVDDIPTWPAS 600 CT+PA T F AD SF K AP PVMFKPDQAAQIDHAWLALGACPWPRP VDD P WPA Sbjct: 558 CTQPAVTGFAADVSFDPKTAPAPVMFKPDQAAQIDHAWLALGACPWPRPAVDDRPAWPAP 617 Query: 601 AMTADEQRRALAAWDAIKACPWPRMVPLPDKSPRHGTPRQXEG--AGRLDVSELPIDPNP 658 MTA+EQRRALA WDAIKACPWPRM P+PDKSPR+GTPRQ AGRLDV ELPIDPNP Sbjct: 618 DMTAEEQRRALADWDAIKACPWPRMAPVPDKSPRYGTPRQVADWRAGRLDVGELPIDPNP 677 Query: 659 TKGNA 663 TKGNA Sbjct: 678 TKGNA 682 >gi|300311674|ref|YP_003775766.1| bacteriophage replication protein [Herbaspirillum seropedicae SmR1] Length = 592 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 225/502 (44%), Positives = 295/502 (58%), Gaps = 25/502 (4%) Query: 49 FAEQYVPAGVDLSQDDADICATAEKAAENVKEVLWKAISDTHARDLIEQECSDYGIDMPE 108 ++ A + L D+ +C A ++ + + R ++ C G+ P Sbjct: 50 LLDEITAAPIPLDATDSQLCVAALHRSQECMSMSGRIHDKAALRQRMQAMCDQQGVPAPG 109 Query: 109 VDDDDLRAIIARVVDPRWWRRQLRKVVGRAFEGGNIRLGYVHYHGEPYASNDAVLSRLAQ 168 VDDD IAR DP WWRRQ RKV GR FE +RLG V YAS++ VL RL Q Sbjct: 110 VDDD--VQFIARCCDPAWWRRQFRKVFGRTFEHAAVRLGLVSVRAGAYASDETVLRRLDQ 167 Query: 169 NRRNAAALEATIVRNEAGQEFSIAELAEKTTANKTIRRGELMLRINGFEAIAKECNDQGL 228 NRRNA L++ + N+ GQE+++A+L K+ AN+ +RRGELMLR+ G E IA E G+ Sbjct: 168 NRRNAKILDSVQMANDQGQEYALADLVAKSVANRKVRRGELMLRMRGCEEIANELGHVGV 227 Query: 229 FLTWSCPSRFHATL-HTGKPNPKYDGSDPRTANKYLGKMTALARSALARRGIGLYGFRIA 287 F+T +CPS+FHA L +G NP Y+ + R A+ YL + R+A AR+ + YGFRIA Sbjct: 228 FVTLTCPSKFHAVLAQSGTANPNYNDATAREAHAYLQTVWQRIRAAYARQDVQPYGFRIA 287 Query: 288 EPHHDGCPHWHMLVFVRALQDYTTPHVKDVASRAIRVMKRYAWRVDRGEPGAFKRRLDVK 347 EPHHDGCPHWHML+F+ KD A I MK YA D EPGA + R+ + Sbjct: 288 EPHHDGCPHWHMLLFI----------AKDDAQVFIDTMKEYALAEDGDEPGAKRNRVKIV 337 Query: 348 RIDWAKGSAAGYIAKYVAKNIDG--VADHKTKEGYLITTDMAGDRELTPSARVEAWAARW 405 RI+ KG+AAGYIAKYV KNID V +HK ++G +I D+ GD + P RVEAWAA W Sbjct: 338 RIEAGKGTAAGYIAKYVGKNIDDEHVPEHKARDGAVIEKDLIGDEVIRPCQRVEAWAACW 397 Query: 406 GIRQFQQWGGAPVSVWRELRRVPADMLTEAPPAMAAAWNAVQKVEGEKRACWASYLRAQG 465 GIRQFQ G PV+VWRELRRV AD + A + A AVQK E EK A +A+Y+RAQG Sbjct: 398 GIRQFQAIGQPPVTVWRELRRVAADKVEGASEHVRQAHAAVQKTE-EKSADFAAYIRAQG 456 Query: 466 GAIVKRDDLMVTLAKETKTVSGRYEECERVMPYGV--QCRQMVGVVFKSVRHTWTPVQGH 523 G + R + ++ +AKE +TV G+Y E P G+ + R G ++ S R+ W V Sbjct: 457 GTGIGR-NYLIAVAKEVRTVQGKYGVYEGEKPTGIFDRARPEAG-IYASTRYEWRVVGKM 514 Query: 524 DARASAGSGFPWTRVNNCTRPA 545 A PWTRVNNCT PA Sbjct: 515 RA-----VDVPWTRVNNCTPPA 531 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,162,536 Number of extensions: 93046 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 2 Length of query: 664 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 573 Effective length of database: 1,188,985 Effective search space: 681288405 Effective search space used: 681288405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)