BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0049.p (356 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic ami... 622 e-179 gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent a... 124 1e-29 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 124 1e-29 gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Her... 98 1e-21 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 68 1e-12 >gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 393 Score = 622 bits (1605), Expect = e-179, Method: Compositional matrix adjust. Identities = 313/333 (93%), Positives = 323/333 (96%) Query: 1 MNLNQLASRLQHIAPFHVMELSKKADILAQQGRDLIHMGIGEPDFTAPPAVVEAATRAMA 60 MNLNQLA+RLQHIAPFHVMELSKKA +L QQGR LIHMGIGEPDFTAPPAVVEAATRAM Sbjct: 1 MNLNQLAARLQHIAPFHVMELSKKAAVLEQQGRHLIHMGIGEPDFTAPPAVVEAATRAMT 60 Query: 61 EGKMQYTSATGLPALRTAISQHYRSVYGLEIAPERIVITAGASAALLLACAALVERDSEV 120 EGKMQYTSATGLP LR AIS HYRSVYGLEIAPERIV+TAGASAALLLACAALVERDSEV Sbjct: 61 EGKMQYTSATGLPQLRAAISDHYRSVYGLEIAPERIVVTAGASAALLLACAALVERDSEV 120 Query: 121 LMPDPSYPCNRHFVAAFEGRAKLIASGPEHRFQLSAQMVREHWGDKTRGVLLASPSNPTG 180 LMPDPSYPCNRHFVAAFEGRAKLIASGPEHRFQLSAQMVREHWG TRGVLLASPSNPTG Sbjct: 121 LMPDPSYPCNRHFVAAFEGRAKLIASGPEHRFQLSAQMVREHWGSATRGVLLASPSNPTG 180 Query: 181 TSIEPEELRAILGEVRQRGGFTIVDEIYQGLSYEGAPFSALSLGEDVVVINSFSKYFNMT 240 TSI P+ELRAI+GEVRQRGGFTIVDEIYQGLSYEGAPFSALSLG+DVVVINSFSKYFNMT Sbjct: 181 TSILPDELRAIVGEVRQRGGFTIVDEIYQGLSYEGAPFSALSLGDDVVVINSFSKYFNMT 240 Query: 241 GWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPETLAIYEERKAEFKRRRD 300 GWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTP+TLA+YEERKAEFKRRRD Sbjct: 241 GWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPQTLALYEERKAEFKRRRD 300 Query: 301 YIVPALESLGFTVPVVPDGAFYVYADCSALSDD 333 YIVPALESLGFTVPV+PDGAFYVYADCSAL+DD Sbjct: 301 YIVPALESLGFTVPVMPDGAFYVYADCSALADD 333 >gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 385 Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 22/289 (7%) Query: 36 IHMGIGEPDFTAPPAVVEAATRAMAEGKMQYTSATGLPALRTAISQHYRSVYGLEIAP-E 94 +++G G PDF PA+V A T+AM EG QY G+P LR AI++ +YG P Sbjct: 31 VNLGQGFPDFHCDPALVAAVTQAMQEGLNQYPPMAGVPVLREAIAEKVEKLYGHRYDPVS 90 Query: 95 RIVITAGASAALLLACAALVERDSEVLMPDPSYPCNRHFVAAFEGRAKLIASGPEH-RFQ 153 I +TAGA+ +L + V EV++ +P Y C +V A E L P + + Sbjct: 91 EITVTAGATQGILTSVLCAVHPGDEVIVIEPVYDC---YVPAIE----LAGGVPVFVQME 143 Query: 154 LSAQMVREHWGD-------KTRGVLLASPSNPTGTSIEPEELRAILGEVRQRGGFTIVDE 206 + AQ W KTR +++ +P NPTG+ + ++ A+ VR + DE Sbjct: 144 VGAQGYSIPWDKVKAAVTPKTRMIMVNTPHNPTGSVMRAADVAALADIVRGTDILILSDE 203 Query: 207 IYQGLSYEGAPFSALS----LGEDVVVINSFSKYFNMTGWRLGWLVLPPALVPQVEKLAQ 262 +Y+ + Y+G P +L+ L E + +SF K +++TGW++G++ P AL + K+ Q Sbjct: 204 VYEHMVYDGQPHESLARHPELAERSFINSSFGKTYHVTGWKVGYVAAPAALTAEFRKVHQ 263 Query: 263 NLLICASSIAQHAAVACFTPETLAIYEERKAEFKRRRDYIVPALESLGF 311 + ++ Q+ A + A Y + A ++ +RD L + F Sbjct: 264 FNVFTVNTPVQYGLAAYM--KDPAPYLDLPAFYQHKRDLFRTGLANTRF 310 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 20/329 (6%) Query: 9 RLQHIAPFHVMELSKKADILAQQ-GRDLIHMGIGEPDFTAPPAVVE----AATRAMAEGK 63 R++ + P+ V ++ + + A++ G D+I M +G PD PP +VE A R G Sbjct: 43 RIERLPPY-VFNITAELKMAARRRGEDIIDMSMGNPDGATPPHIVEKLVEVAQRPDTHG- 100 Query: 64 MQYTSATGLPALRTAISQHYRSVYGLEIAPE-RIVITAGASAALLLACAALVERDSEVLM 122 Y+S+ G+P LR AI+ YRS Y ++ P+ ++T G+ L A +++ VL+ Sbjct: 101 --YSSSKGIPRLRRAIAHWYRSRYEVDFDPDSEAIVTIGSKEGLAHLMLATLDKGDTVLV 158 Query: 123 PDPSYPCNRH--FVAAFEGRAKLIASGPEHRFQLSAQMVREHWGDKTRGVLLASPSNPTG 180 P+PSYP + + +A R+ ++ G + F + VRE + K + ++L PSNPT Sbjct: 159 PNPSYPIHIYGAVIAGANIRSVRMSPGVDF-FDELERAVRESY-PKPKMMILGFPSNPTA 216 Query: 181 TSIEPEELRAILGEVRQRGGFTIVDEIYQGLSYEG--APFSALSLGEDVVVINSF--SKY 236 +E E ++ R+ + D Y ++++G AP G V + F SK Sbjct: 217 QCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAREVAVEFFTLSKS 276 Query: 237 FNMTGWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPETLAIYEERKAEFK 296 +NM GWR+G++V LV + ++ + + Q AA+A + + EE +A ++ Sbjct: 277 YNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCV-EEIRANYE 335 Query: 297 RRRDYIVPALESLGFTVPVVPDGAFYVYA 325 RRR+ +V L G+ V VP + Y++A Sbjct: 336 RRRNVLVKGLHEAGWMVD-VPKASMYIWA 363 >gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 409 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 9/234 (3%) Query: 23 KKADILAQQGRDLIHMGIGEP---DFTAPPAVVEAATRAMAEGKMQYTSATGLPALRTAI 79 +KA + ++G +I + IG F AP +V+ R M YT + GL A R ++ Sbjct: 23 EKARQMEEEGHKIIKLNIGNLAAFGFDAPDEIVQDMIRNMGNAS-GYTDSKGLFAPRKSV 81 Query: 80 SQHYRSVYGLE-IAPERIVITAGASAALLLACAALVERDSEVLMPDPSYPCNRHFVAAFE 138 HY +E + + I + GAS ++++ AL+ EVL+P P YP V+ Sbjct: 82 -MHYTQQKKIEGVTIDDIYLGNGASELIVMSVNALLNTGDEVLVPSPDYPLWTAAVSLSG 140 Query: 139 GRAKLIASGPEHRFQLSAQMVREHWGDKTRGVLLASPSNPTGTSIEPEELRAILGEVRQR 198 G + +Q +++ T+ +++ +P+NPTG E L+ I+ RQ Sbjct: 141 GTPVHYVCDEQQGWQPDIADIKKKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQH 200 Query: 199 GGFTIVDEIYQGLSYEGAPFSAL-SLGEDVVVI--NSFSKYFNMTGWRLGWLVL 249 + DEIY + Y+G ++L SL +DV+ I N SK + G+R GW+V+ Sbjct: 201 QLIILADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSKNYRSCGYRAGWMVV 254 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 113/254 (44%), Gaps = 25/254 (9%) Query: 61 EGKM--QYTSATGLPALRTAISQHYRSVYGLEIAPERIVITAGASAALLLACAALVERDS 118 +GKM QY G LR I+ S G +I+ E++++ +G+ L L L++ S Sbjct: 66 QGKMALQYGPTDGYLPLREWIAASL-STNGAQISAEQVLMVSGSQQGLDLLGKVLIDEGS 124 Query: 119 EVLMPDPSYPCNRHFVAAFEGRAKLIASGPEHRFQLSAQMVREHWGDKTRGVLLASPSNP 178 +VL+ PSY A + + S P F L + + G L + NP Sbjct: 125 KVLVETPSYLGALQAFALYGAK---FESVPSDEFGLQPETIEAIAGGARMLYSLPNFQNP 181 Query: 179 TGTSIEPEELRAILGEVRQRGGFTIV-DEIYQGLSYEGAPF-SALSLG-EDVVVINSFSK 235 TG ++ P E R L E R G ++ D+ Y LSY+ AP LS+ V+ + SFSK Sbjct: 182 TGRTL-PTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPSGVIYMGSFSK 240 Query: 236 YFNMTGWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPETLAIYEERKAEF 295 G RLG++V P L+ ++E+ Q + + + Q + +YE K F Sbjct: 241 VLT-PGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQ-----------MVVYEAIKDGF 288 Query: 296 KRRRDYIVPALESL 309 D VP + L Sbjct: 289 ---LDQHVPTIRKL 299 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,085,414 Number of extensions: 44571 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 8 Length of query: 356 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 270 Effective length of database: 1,212,660 Effective search space: 327418200 Effective search space used: 327418200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)