BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0048.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312877|ref|YP_003776969.1| transmembrane transglycosylase,...   516   e-148

>gi|300312877|ref|YP_003776969.1| transmembrane transglycosylase,
           SLT family protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  516 bits (1330), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/316 (87%), Positives = 296/316 (93%), Gaps = 4/316 (1%)

Query: 1   MVRRVDFRNLSGNPRIAQFFGIAHRLLTILGIAALFVLGLMFFNPDLADKLISMSPFSDA 60
           M++RV  RNLSGN RIA+FFGIAHRLLTILGIAALFVLGLMFFNPDLAD+LISMSPFS  
Sbjct: 16  MLQRVSLRNLSGNARIARFFGIAHRLLTILGIAALFVLGLMFFNPDLADRLISMSPFS-- 73

Query: 61  TEEVAEAEAPAAPALADLMAPTAPVATVSALAGAAAASSVQQQATAPAQALSPEERQLIG 120
           T+EV EA+AP+ P LADLMAPTAPVATVSA+AGAAAA++VQ    A AQ L+PE+RQL+G
Sbjct: 74  TDEVQEADAPSTPVLADLMAPTAPVATVSAMAGAAAATAVQTAPMA-AQELTPEQRQLLG 132

Query: 121 NPRQQKLVTNWLAKRYRVASDAADMLVSAAYLTARDIKLDPLLILSVIAIESRFNPFAES 180
            PRQQKLVTNWLAKRYRVA+DAADMLVSAAYLTARDIKLDPLLILSVIAIESRFNPFAES
Sbjct: 133 TPRQQKLVTNWLAKRYRVATDAADMLVSAAYLTARDIKLDPLLILSVIAIESRFNPFAES 192

Query: 181 PMGAQGLMQVMSKVHHDKFQELGGIKAALNPVANIRVGSQILKEYVTRGGSVEAGLKSYV 240
           PMGAQGLMQVM+KVHHDKFQELGGIKAALNPVANIRVGSQILKEYVTRGGSVEAGLKSYV
Sbjct: 193 PMGAQGLMQVMAKVHHDKFQELGGIKAALNPVANIRVGSQILKEYVTRGGSVEAGLKSYV 252

Query: 241 GAADMANDGGYGIKVLSEYQNLKQVAMGKNVSIYTTATVKLPPASGVSASADQPKPTANN 300
           GAADMANDGGYGIKVLSEYQNLKQVAMGKNVSIYTTATVKL P  GVSASA+QPKP +NN
Sbjct: 253 GAADMANDGGYGIKVLSEYQNLKQVAMGKNVSIYTTATVKL-PTPGVSASAEQPKPASNN 311

Query: 301 VASAAKPKTEEQLAAL 316
           VA+AAKPK EEQLAAL
Sbjct: 312 VAAAAKPKAEEQLAAL 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 777,534
Number of extensions: 28217
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)