BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0047.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312876|ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate ...   992   0.0  

>gi|300312876|ref|YP_003776968.1| 3-polyprenyl-4-hydroxybenzoate
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/494 (96%), Positives = 488/494 (98%)

Query: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEIADRTLRAEGPALLFEQVDKKNIPVL 60
           MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEI DRTLRAEGPALLFE VD+KNIPVL
Sbjct: 1   MKYTDLRDFISQLQQKGELKRVSHPVSSHLEMTEICDRTLRAEGPALLFEHVDQKNIPVL 60

Query: 61  ANLFGTPHRVALGMGADSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120
           ANLFGTPHRVALGMGAD+I ELRRIGHLLARLKEPEPPKGIKDVLDLG LVKSLWDMAPK
Sbjct: 61  ANLFGTPHRVALGMGADNIGELRRIGHLLARLKEPEPPKGIKDVLDLGSLVKSLWDMAPK 120

Query: 121 ERGSAPCQDVVWEGKEVDLSRLPIQHCWPGDIAPLITWGLVITKGPNKKRQNLGIYRQQV 180
           ERGSAPCQDVVWEGK+VDLSRLPIQHCWPGDIAPLITWGLV+TKGP+KKRQNLGIYRQQV
Sbjct: 121 ERGSAPCQDVVWEGKDVDLSRLPIQHCWPGDIAPLITWGLVVTKGPHKKRQNLGIYRQQV 180

Query: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPIAVALGADPATILGAVTPVPDSLSEYQ 240
           LGPNKVIMRWLAHRGGALDFREHCIANPGKPYP+ VALGADPATILGAVTPVPD+LSEYQ
Sbjct: 181 LGPNKVIMRWLAHRGGALDFREHCIANPGKPYPVVVALGADPATILGAVTPVPDNLSEYQ 240

Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300
           FAGLLRGSRTELVKAMGS+LRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN
Sbjct: 241 FAGLLRGSRTELVKAMGSELRVPASAEIVLEGHIYPDEKHASGFEHALEGPYGDHTGYYN 300

Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360
           EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL
Sbjct: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360

Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420
           PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDV+IRDWKEVIWA
Sbjct: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWA 420

Query: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMSDD 480
           ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVM +D
Sbjct: 421 ITTRVDPVRDTVMVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETSREWGTPIVMDED 480

Query: 481 VKKRVDAIWQDLGI 494
           VKKRVDAIWQDLGI
Sbjct: 481 VKKRVDAIWQDLGI 494


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,677,765
Number of extensions: 76315
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)