BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0046.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312875|ref|YP_003776967.1| glucokinase [Herbaspirillum ser...   293   8e-81

>gi|300312875|ref|YP_003776967.1| glucokinase [Herbaspirillum
           seropedicae SmR1]
          Length = 333

 Score =  293 bits (749), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 145/162 (89%), Positives = 153/162 (94%)

Query: 21  SEGGHVAFAPANAREAAVLAYAWQFHEHVSAERMVSGPGLEFIHRALLAIEGHPAAELKA 80
           SEGGH AFAPA+ REAAVLAYAWQFHEHVSAER+VSGPGLE IHRALLAI+GHPAAEL A
Sbjct: 168 SEGGHAAFAPADPREAAVLAYAWQFHEHVSAERLVSGPGLELIHRALLAIDGHPAAELSA 227

Query: 81  AEIVDGALKQGDAVCLETLDLFCSMLGTVAADLALTLGALGGIYIGGGVVPHLGEYFARS 140
           A+IV+GA + GDA+C ETL LFCSMLGTVAADLALTLGALGGIYIG GVVPHLG+YFARS
Sbjct: 228 AQIVEGARQHGDALCQETLALFCSMLGTVAADLALTLGALGGIYIGVGVVPHLGDYFARS 287

Query: 141 PFRARFENKGRMSVLTKAIPTYVITAEYPAFTGVSAILADRL 182
           PFRARFENKGRMSVLTKAIPTYVITAEYPAFTGVSAILADRL
Sbjct: 288 PFRARFENKGRMSVLTKAIPTYVITAEYPAFTGVSAILADRL 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 535,040
Number of extensions: 18482
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)