BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0044.p (576 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 911 0.0 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 238 1e-63 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 184 2e-47 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 168 1e-42 gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill... 70 7e-13 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/603 (74%), Positives = 493/603 (81%), Gaps = 27/603 (4%) Query: 1 MHQQANASLILLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEA 60 M QQANA+ ILLQKALALHQKG LAPAEELYKKVLVKLP HFEANYLYGMLKLHQEDWE Sbjct: 1 MRQQANANQILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWET 60 Query: 61 AEAQLAHAIELNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAAL 120 AEAQLA AIELNPDH DTYFDHAGAL HLGRD EAV RYD +L DF +AL+ARGAAL Sbjct: 61 AEAQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAAL 120 Query: 121 RRLKRNREALADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEA 180 RRL RNREALAD+ERA AL PDN DAWFQ GN+ H+ Y Y DAR SYERAVALRPDFIEA Sbjct: 121 RRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEA 180 Query: 181 WFNLGNTCKDSYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMA 240 WFNLGNTCKD Q D+ALRAYD ALEVQPDFFEA SNRG+VLFKMQRP EAL+AYDRA+A Sbjct: 181 WFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALA 240 Query: 241 LDDSSPDLWFNRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGW 300 LD+ +PDLWFNRGSTLEQLYRF EA+E YRRA+ LKPDA SA WN+AL++LRQGD+ NGW Sbjct: 241 LDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGW 300 Query: 301 PAYESRWATEQMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALG 360 +E+RWATEQMR Q RQF+QPLWLG+Q L+ KTIL+HAEQGFGDTLQFVRY P +AA G Sbjct: 301 KGFETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARG 360 Query: 361 ARVILEVPPALVRLLAKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRAP 420 ARVILEV PAL R LA +PG QVI +D FMRP FD+HCPLMSLPLACK+FSEADIPRAP Sbjct: 361 ARVILEVQPALTRQLAGLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP 420 Query: 421 YLLPDADAWAAW---------------------------PRIDGERSLPFEALAPVVELA 453 YLLP+A +WAAW RIDGERSLPF LAP+VELA Sbjct: 421 YLLPEASSWAAWHQRLPRNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELA 480 Query: 454 QEHAQLEFYSVQVGETAVAQLRNHPLASHVRDCSAELQDFADTSGLIANLDLLISVDTSA 513 +EHA LEFYS+QVG+ AVAQL HPLAS VRDCS EL DFA+T L+ANLDLLI+VDTS Sbjct: 481 REHAALEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSV 540 Query: 514 CHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVRSALLQ 573 CHLAGALG+PVWLLNR N CWRWQ+ER D+PWY GM +F Q+ G W EV+A VR+AL Q Sbjct: 541 CHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQ 600 Query: 574 QLA 576 QLA Sbjct: 601 QLA 603 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 238 bits (607), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 199/610 (32%), Positives = 285/610 (46%), Gaps = 51/610 (8%) Query: 6 NASLILLQKA---LALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAE 62 N +L+ A +A+H+ G A AE +K + P++ E L Q+ + A Sbjct: 54 NPTLVFANHARGLVAMHE-GKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAI 112 Query: 63 AQLAHAIELNPDHRDTYFDHAGALVHLGRDAEA-VQRYDEILAQTPDFADALMARGAALR 121 A HAI ++ DHR + A AL H D EA V +++ + + P+ L G AL Sbjct: 113 ALYEHAIRIDRDHRASRIGLANAL-HEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALI 171 Query: 122 RLKRNREALADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEAW 181 KR EA+A I ++ L + LG H Y++A S++ A+ L P A Sbjct: 172 ECKRYNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAH 231 Query: 182 FNLGNTCKDSYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQ-RPMEALEAYDRAMA 240 + ++ + DEA +E+ P A G F R +A+ +++A+ Sbjct: 232 NKIADSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALE 291 Query: 241 LDDSSPDLWFNRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGW 300 +D + N G+ +A +R+A EL+P+ +A N AL L QG GW Sbjct: 292 VDSKHALTYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGW 351 Query: 301 PAYESRWATEQMRTQVRQFLQ------PLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLP 354 +ESR T + R+ V + + P W G+ SL K IL+ EQGFGD++QF+RY+ Sbjct: 352 ECHESRLVTRE-RSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVR 410 Query: 355 QVAALGARVILEVPPALVRLL-AKVPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSE 413 V GARV L V L RL + P V SD P D LMSLP A + + Sbjct: 411 MVLDQGARVALHVKNPLYRLFQSYSPEVTLVRESDPL--PPCDCAYVLMSLPYAMGTDTV 468 Query: 414 ADIPRAP--YLLPDADAWAAWP-------------RI------------DGERSLPFEAL 446 DIP P YL D ++W R+ D RS+ + Sbjct: 469 DDIPSVPGGYLSADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKF 528 Query: 447 APVVELAQEHAQLEFYSVQVGETAVAQLRNHPLASHVRDCSAELQDFADTSGLIANLDLL 506 A + +L +EFYS+Q G+ A + P + + + QDFADT+ IANLDL+ Sbjct: 529 ATLFQLPN----IEFYSLQKGKPLDA-FKALPPGLPIFNLGDDCQDFADTAAAIANLDLV 583 Query: 507 ISVDTSACHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAE 566 +SVDTS HLAGALG P W+L WRW +R D+PWYPGM LFRQ DW V+ + Sbjct: 584 VSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTK 643 Query: 567 VRSAL--LQQ 574 V L LQQ Sbjct: 644 VGQELVALQQ 653 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 187/598 (31%), Positives = 262/598 (43%), Gaps = 80/598 (13%) Query: 12 LQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAEAQLAHAIEL 71 L+ AL+ + D A A+ L +L P +A +L G + Q + A A+ L Sbjct: 7 LKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL 66 Query: 72 -NPDHRDTY---FDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAALRRL---- 123 PD + + A GR +A Y E++ + +A AAL+ + Sbjct: 67 LPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQGMSPSG 126 Query: 124 KRNREALADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYERAVALRPDFIEAWFN 183 K + +ALA +E A P D W + L + AR +A+ L + W Sbjct: 127 KNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLA 186 Query: 184 LGNTCKDSYQFDEALRAYDHALEVQPDFFEAQSNRGFVLFKMQRPMEALEAYDRAMALDD 243 G QF+EALR Y D+A+ L Sbjct: 187 AGLVEHAQGQFEEALRYY----------------------------------DQALILAP 212 Query: 244 SSPDLWFNRGSTLEQLYRFSEATECYRRARELKPDASSAAWNDALLKLRQGDYANGWPAY 303 D +RG+TL +L + EA + YRRA + + A N AL L G WP Y Sbjct: 213 ELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLY 272 Query: 304 ESRWATEQMRTQVRQFLQPLWLGQQSLQDKTILIHAEQGFGDTLQFVRYLPQVAALGARV 363 E RW R P W G SL K IL+ AEQG GDT+QF RY+ + GA+V Sbjct: 273 EWRWEGRSA-DPYRHATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGAQV 331 Query: 364 ILEVPPALVRLLAK--VPGAAQVISSDQFMRPGFDYHCPLMSLPLACKSFSEADIPRA-P 420 +LEVP +L+ L+ VP +++ + + P D+ PLMSLPL C + ++ DIP A P Sbjct: 332 VLEVPASLLALMHSLAVPTPLTLVAMGEPL-PEVDFQLPLMSLPLVCNTRAD-DIPAAVP 389 Query: 421 YLLPDADAWAAW--------PRI------------------DGERSLPFEALAPVVELAQ 454 YL D W PR D RS+ AP LA Sbjct: 390 YLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAP---LAL 446 Query: 455 EHAQLEFYSVQVG-ETAVAQLRNHPLASHVRDCSAELQDFADTSGLIANLDLLISVDTSA 513 QL+F+ +Q A Q H A + DFADT+ ++A +DL+ISVDT+A Sbjct: 447 ARPQLDFFVIQPDLRQADRQWCEQQPGWHW--VGAAINDFADTAAVLAGMDLVISVDTAA 504 Query: 514 CHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFRQKQTGDWSEVVAEVRSAL 571 HLAGA+ PVW+ WRW L +D+PWYP LFRQ+Q G W +V+ +R+AL Sbjct: 505 AHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILTLRAAL 562 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 131/382 (34%), Positives = 185/382 (48%), Gaps = 36/382 (9%) Query: 221 VLFKMQRPMEALEAYDRAMALDDSSPDLWFNRGSTLEQLYRFSEATECYRRARELKPDAS 280 +L ++ R EALE Y A D + FN L ++ R +A + +A PD Sbjct: 152 ILLRLNRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFP 211 Query: 281 SAAWNDALLKLRQGDYANGWPAYESRWATEQMRTQVRQFLQPLWLGQQSLQDKTILIHAE 340 A A + L Q YA GW A+E+R+ ++ + +P W + ++ K +L+ AE Sbjct: 212 EAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPRPRWRAGEPVRGKRVLLWAE 271 Query: 341 QGFGDTLQFVRYLPQVAALGARVILEVPPALVRLLAKVPGAAQV-ISSDQFMRPGFDYHC 399 QG GDTLQF RY+P VA A V L P +L+ +LA P QV ++ P D H Sbjct: 272 QGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLA--PCLPQVRCMANPGEAPDHDLHA 329 Query: 400 PLMSLPLACKSFSEADIPRAPYLLPD-----------ADAWAAWPR-------------- 434 L+SLPL P +PYL + W A PR Sbjct: 330 SLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQYA 389 Query: 435 -IDGERSLPFEALAPVVELAQEHAQLEFYSVQVGETAVAQLRNHPLASHVRDCSAELQDF 493 + R +P +ALAP+ L +F S+QV A Q + LA + + L D+ Sbjct: 390 TVHHSRDIPLDALAPLWTLPA-----DFVSLQVEVPAGDQAAHATLAQRLH--TPTLVDW 442 Query: 494 ADTSGLIANLDLLISVDTSACHLAGALGKPVWLLNRANTCWRWQLERSDTPWYPGMHLFR 553 ADT+ L+ LDL+ISVDT+ HLAGALG P L R + WRW ++ S TPWYP + L R Sbjct: 443 ADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLR 502 Query: 554 QKQTGDWSEVVAEVRSALLQQL 575 Q++ G W VV E+ + Q+L Sbjct: 503 QRERGQWGPVVEEMLAVCTQRL 524 >gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 85/194 (43%) Query: 90 GRDAEAVQRYDEILAQTPDFADALMARGAALRRLKRNREALADIERAAALTPDNPDAWFQ 149 GR +A Y+ +L P AL G L + ++ EAL +E A+AL PDN D Sbjct: 32 GRLDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALEPDNADWHND 91 Query: 150 LGNLQHEFYGYRDARASYERAVALRPDFIEAWFNLGNTCKDSYQFDEALRAYDHALEVQP 209 GN+ A +Y A+ALRPD W NLG + +A+ A++ AL++ P Sbjct: 92 RGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAISAFERALQIDP 151 Query: 210 DFFEAQSNRGFVLFKMQRPMEALEAYDRAMALDDSSPDLWFNRGSTLEQLYRFSEATECY 269 DF + + G + M+A RA L W G + L R EA E Y Sbjct: 152 DFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAAEAY 211 Query: 270 RRARELKPDASSAA 283 R +PD AA Sbjct: 212 RAWLREEPDNPIAA 225 Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 96/203 (47%), Gaps = 6/203 (2%) Query: 11 LLQKALALHQKGDLAPAEELYKKVLVKLPDHFEANYLYGMLKLHQEDWEAAEA--QLAHA 68 LL++A+ H G L A +Y+ VL P H A + YG+ LHQ D + EA +L A Sbjct: 21 LLRQAIDAHMAGRLDQACAIYEAVLEADPIHPLALHYYGIW-LHQ-DGQHDEALDKLELA 78 Query: 69 IELNPDHRDTYFDHAGALVHLGRDAEAVQRYDEILAQTPDFADALMARGAALRRLKRNRE 128 L PD+ D + D L L + A A Q Y + LA PD GA L + + + Sbjct: 79 SALEPDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPD 138 Query: 129 ALADIERAAALTPDNPDAWFQLGNLQHEFYGYRDARASYE-RAVALRPDFIEAWFNLGNT 187 A++ ERA + PD + LG + HE G + + Y+ RA L P ++W LG + Sbjct: 139 AISAFERALQIDPDFLPSLLHLGGI-HEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGIS 197 Query: 188 CKDSYQFDEALRAYDHALEVQPD 210 + EA AY L +PD Sbjct: 198 FYFLGRLPEAAEAYRAWLREEPD 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,832,575 Number of extensions: 76956 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 273 Number of HSP's successfully gapped: 11 Length of query: 576 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 486 Effective length of database: 1,193,720 Effective search space: 580147920 Effective search space used: 580147920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)