BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0039.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...   377   e-106
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...    67   8e-13

>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score =  377 bits (968), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/185 (97%), Positives = 183/185 (98%)

Query: 1   MMELRKANDRGHANHGWLDSYHSFSFADYYDPKHMGFGPLRVINEDRVAAGQGFGTHGHR 60
           MME+RKANDRGHANHGWLDSYHSFSFADYYDP+HMGFGPLRVINEDRVAAGQGFGTHGHR
Sbjct: 1   MMEIRKANDRGHANHGWLDSYHSFSFADYYDPRHMGFGPLRVINEDRVAAGQGFGTHGHR 60

Query: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120
           DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM
Sbjct: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120

Query: 121 PDRAGAEPGYQEAHFSAADKDGKLRLVASRDGREGSVSMNQDAQLYAGLFDGAQAAEYTL 180
           PDRAGAEPGYQEAHFSAADKDGKLRLVAS DGR+GSVSMNQDAQLYAGLFDGAQ AEYTL
Sbjct: 121 PDRAGAEPGYQEAHFSAADKDGKLRLVASADGRDGSVSMNQDAQLYAGLFDGAQTAEYTL 180

Query: 181 PQGRL 185
           PQGRL
Sbjct: 181 PQGRL 185


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score = 67.4 bits (163), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 12/127 (9%)

Query: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112
           GF  H HR  E ++Y+L G + H+D+ GN  ++ PG +Q M+AG G+ HSE    ++G  
Sbjct: 61  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLM 120

Query: 113 HFLQIWIMPDRAG----AEPGYQEAHFSAADKDG-----KLRLVA-SRDGREGSVSMNQD 162
              Q+W+  + AG     EPGYQ+   +   +       ++R++A S  G +G++     
Sbjct: 121 SGFQLWV--NLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATT 178

Query: 163 AQLYAGL 169
             LY  L
Sbjct: 179 EPLYLDL 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 703,441
Number of extensions: 31472
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)