BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0035.p
         (436 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase...    86   5e-18
gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase...    74   2e-14

>gi|300312865|ref|YP_003776957.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 152 IVFSNIVLLLGMLSVA--TSTSSQSESWPWRVLRIVAALAGMYASYLSQARGSWIAIP-- 207
           I + +I  ++G+L +   T    Q  +  W  L IV  + G+  S  + +RGSW+A+P  
Sbjct: 137 IQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGLMGSLFTGSRGSWVALPIC 196

Query: 208 FLGLFASYLWQPNKRYV-TTVVAAVLLTGALVLAWSSPMVKSRFLQVETETASFRSGTDL 266
            L L   Y      RYV  ++ A V     +     S   ++R     +E +++    D 
Sbjct: 197 LLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRARISLAFSEASTYMQKKDA 256

Query: 267 DTSLGTRFQLWHGSMVLFTEHPLLGVGPGKFTA-GLRELKERKIITPAAASGFYHSHNDV 325
           D+S+GTR ++W    +   E P+LG+G   F      +++  KI   A  SG  H +N+ 
Sbjct: 257 DSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAGKI--NALMSGNNHVYNEW 314

Query: 326 LFNMSTMGLLGLLAILMTYLAPAVLFWRYLRHEDACLRRYAGGGVMLVMGYVIFGLTDCF 385
           L  +   G+ GLL +L  Y  P  LF   L+      + YA GGV+L++ Y+ FG +  F
Sbjct: 315 LDALVKRGVPGLLVLLALYFVPLRLFIARLKSAPEQAKPYALGGVLLIVNYIGFGFSQVF 374


>gi|300312860|ref|YP_003776952.1| Lipid A core - O-antigen ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 179 WRVLRIVAALAGMYASYLSQARGSWIAIPFLGLFASYLW--QPNKRYVTTVVAAVL-LTG 235
           W+++     + G+ AS LS +RGSW+A+P     A++L       R V  + A  L +  
Sbjct: 186 WKLMHAAGLILGLTASILSGSRGSWLALPVCATLAAWLLLRAGYARLVLQLGAGSLAMLV 245

Query: 236 ALVLAWSSPMVKSRFLQVETETASFRSGTDLDTSLGTRFQLWHGSMVLFTEHPLLGVGPG 295
            L L   SP+  +R      ET  +    D D+S+GTR ++W   M L  +H L+G G  
Sbjct: 246 CLALLPQSPL-SARLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLLVGWGKQ 304

Query: 296 KFTAGLRELKERKIITPAAASGFYHSHNDVLFNMSTMGLLGLLAILMTYLAPAVLFWRYL 355
                  E+  +   +P+      H HN+ L  +   G+ GL A+L+ YL P  LF R  
Sbjct: 305 GMIDAKHEMVSQGQASPSVDE-HTHLHNEYLDALVKRGIPGLAALLVLYLLPLWLFHRQR 363

Query: 356 RHEDACLRRYAG-GGVMLVMGYVIFGLTDCFFWG----LSYTFYC 395
           R       R A   GVM+V+ Y+ FGLT  F       + Y F C
Sbjct: 364 RLAAGYEARLAASAGVMMVLSYLAFGLTQAFLTHNNGVMLYAFLC 408


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,266,978
Number of extensions: 52585
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 436
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,203,190
Effective search space: 418710120
Effective search space used: 418710120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)