BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0033.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   186   9e-49
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   165   3e-42

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  186 bits (473), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 132/214 (61%), Gaps = 2/214 (0%)

Query: 1   VLKDTAREVLYLDADILCTGSIAGLRALDLRDDVVAVVSDHLETTVRNRCAALQLPADQY 60
           VL +    VLYLDADILC   +  L  +D+  D+  VV D    T++ R AAL+L   +Y
Sbjct: 113 VLAEVTDRVLYLDADILCFNRLDALVDMDISQDIAVVVPD-APVTLQRRVAALELAHKEY 171

Query: 61  FNSGVLYINVANWIANDITAQVMQAIVQHGQKLVFPDQDALNIVLAGRARYIEPCWNFRY 120
           FN GV++IN+  W+A DIT + + A++     + F DQDALNIVL GRARY+ P WN+ Y
Sbjct: 172 FNGGVIFINIPKWLAEDITPKTLDALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLY 231

Query: 121 NLEFMLNGGQFDTWLPGPAVFLHFTGRVKPWHAWNLHPSRELFSKYLALSPWAGTPLD-A 179
           +L   LN  +F     G A+F+HF G VKPW AW+ H +  LF +YL +SPWA   LD  
Sbjct: 232 DLIHDLNVNKFALKPVGKAIFVHFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQE 291

Query: 180 PRHYKEMRMYAGFLRKKKQWGGWLAWYATYLAHK 213
           PR+ KE+RM++ F+ ++ +    L WY  YL  +
Sbjct: 292 PRNTKELRMHSRFMYRQGRPLESLKWYLRYLGKR 325


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  165 bits (417), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 125/214 (58%), Gaps = 4/214 (1%)

Query: 1   VLKDTAREVLYLDADILCTGSIAGLRALDLRDDVVAVVSD---HLETTVRNRCAALQLPA 57
            LKD    VLY+DAD+LC GS+  L  +DL      VV D      T    R + L L  
Sbjct: 115 TLKDQTDRVLYVDADMLCVGSLEELMGMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKH 174

Query: 58  DQYFNSGVLYINVANWIANDITAQVMQAIVQHGQKLVFPDQDALNIVLAGRARYIEPCWN 117
            +YFN+G+LYIN+  W  N ++   ++A+V +  KL F DQDALNIVL G+ARYI   WN
Sbjct: 175 PRYFNAGMLYINIPEWEKNKVSEAAIRALVSNPDKLTFNDQDALNIVLDGQARYIPVKWN 234

Query: 118 FRYNLEFMLNGGQFDTWLPGPAVFLHFTGRVKPWHAWNLHPSRELFSKYLALSPWAGTPL 177
           + Y++   L  G+      G A  +HF G VKPW  W+ H +REL+ +Y  LS W+  PL
Sbjct: 235 YIYSMIADLKQGRQTMSPVGDARIIHFAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPL 294

Query: 178 D-APRHYKEMRMYAGFLRKKKQWGGWLAWYATYL 210
           D AP ++KEMR+YA FL K+  +   L W A +L
Sbjct: 295 DAAPLNHKEMRVYARFLIKRGDYACGLYWNARFL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 726,304
Number of extensions: 29627
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)