BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0032.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS heptosyltransfe...   160   7e-41

>gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS
           heptosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  160 bits (404), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 92/122 (75%)

Query: 4   THIPPQLLQQSDKILIIAHLALGDFTYLQNSLRALAQAYPHLRIHVWVDELRRTDDASQW 63
           T IP  LL++SDKIL IAHLALGDFTYLQN  +A A  +PHL++H+WVDE+RRT D+SQW
Sbjct: 6   TLIPADLLKKSDKILFIAHLALGDFTYLQNFFKAFAAQHPHLKVHLWVDEVRRTADSSQW 65

Query: 64  PHLKRYAIYDWLRECSFIERIYDETYSPALLEQSIGRAQAEAYPLVVSLGLLRRPAYARL 123
           PHL++YA+YDW   C F  ++Y  TYSPAL   SI  A+AE YP+VVSL  LR   YA L
Sbjct: 66  PHLQKYALYDWTAACPFFAKVYTRTYSPALYRDSIEEARAEHYPIVVSLATLRPHLYAGL 125

Query: 124 AR 125
           AR
Sbjct: 126 AR 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 499,900
Number of extensions: 16837
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)