BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0031.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS heptosyltransfe...   222   2e-59

>gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS
           heptosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  222 bits (566), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/215 (50%), Positives = 147/215 (68%), Gaps = 2/215 (0%)

Query: 7   LAYRKLDAVIPAYPKKEKGARHISDIYAGWFETLFGITIAPAERFPFVDIPPQWHAWSSE 66
           LAYRKLDAV+P Y +  +   HISD+YA WF  L G+ +    RFPFVDIPPQW  ++ +
Sbjct: 151 LAYRKLDAVMPPY-RSSQPEHHISDVYAHWFRQLSGLEVTGQARFPFVDIPPQWRQYAQD 209

Query: 67  QLQQWGVGPQQ-KLIFVNGFSKAPERSWSLDRILDLARRLQSRPGWEEVHFVVNVVPEAL 125
           QL  W   P+  KL+F+N ++K  +R W L+ + DL + +Q R GW++   +VN VP+ L
Sbjct: 210 QLAAWQFAPRTGKLVFINPYAKTRKRCWPLEHVADLIQAMQQREGWQDARVIVNAVPQEL 269

Query: 126 ADAERRLAAVQSPRLHLFSADQNFFQLPAMLARCQLVISVETAVMHLANAVHVPVLALMR 185
           A A   +         LFSA++NFFQLPAMLA C L+ISVETAVMHLANAVHVPV+ALMR
Sbjct: 270 AHAREVIGRYGLQGTELFSAEENFFQLPAMLAACDLIISVETAVMHLANAVHVPVIALMR 329

Query: 186 RTSPEWTPIDQANSTVIWVATPKGGVEEITTEQVI 220
           + +PEW P+D+A+STVI     +  V+ ++ EQV+
Sbjct: 330 QKNPEWVPVDRAHSTVITAPGRRDWVKAVSVEQVM 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 739,219
Number of extensions: 28401
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)