BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0030.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   408   e-115
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   338   2e-94

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  408 bits (1049), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 186/315 (59%), Positives = 235/315 (74%)

Query: 7   ADAGPSFHIAFCVDNNYFRAMGATIASIIANNPQRRFTFHVLTFAASEQHRQRLQELEQN 66
            +  PSFHIAFCVDNNYFRAMG TIASI+ANNP + FTFHVL F  SE H++RL++LE  
Sbjct: 14  GNGKPSFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAM 73

Query: 67  PLVQTRLHLLETSDFAQFEHFLKSSYYSLSIFTRLVIPTVLQDVTDRVLYLDADMLCVGS 126
             V+T LHLL+ +DF QF HFL  S+YSLSIFTRLVIPTVL +VTDRVLYLDAD+LC   
Sbjct: 74  YRVKTELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNR 133

Query: 127 LDGLAQLDMQDDIVAVAPDHPATTEKRCAALQLADPRYFNSGMLYINIPRWQEAKITEQV 186
           LD L  +D+  DI  V PD P T ++R AAL+LA   YFN G+++INIP+W    IT + 
Sbjct: 134 LDALVDMDISQDIAVVVPDAPVTLQRRVAALELAHKEYFNGGVIFINIPKWLAEDITPKT 193

Query: 187 MQVLLDNTQTLRFIDQDVLNIVLNGRARYISRNYNYLYDMVHDLKSNETRMRPVGKAVII 246
           +  LL++   +RF DQD LNIVLNGRARY+S  +NYLYD++HDL  N+  ++PVGKA+ +
Sbjct: 194 LDALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFV 253

Query: 247 HFAGPIKPWSAWTGHEATRLFAQYHQLSPWRQMPADEAPTNSTERRMHSRFLYRQGKYLQ 306
           HFAG +KPW+AW+ HEA  LF +Y  +SPW  M  D+ P N+ E RMHSRF+YRQG+ L+
Sbjct: 254 HFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLE 313

Query: 307 SLVWFVRYLRKHSRK 321
           SL W++RYL K + K
Sbjct: 314 SLKWYLRYLGKRAAK 328


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  338 bits (868), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 211/318 (66%), Gaps = 4/318 (1%)

Query: 9   AGPSFHIAFCVDNNYFRAMGATIASIIANNPQRRFTFHVLTFAASEQHRQRLQELEQNPL 68
           A  ++HIAFCVDN+YFRAMGA +AS++ANNP RRF FHV  FA S+ + +R++ +E+NP 
Sbjct: 18  ADAAWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEENPN 77

Query: 69  VQTRLHLLETSDFAQFEHFLKSSYYSLSIFTRLVIPTVLQDVTDRVLYLDADMLCVGSLD 128
           ++   HL+    FA+F   +  SYYSLS FTRL++P  L+D TDRVLY+DADMLCVGSL+
Sbjct: 78  IKVVPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVGSLE 137

Query: 129 GLAQLDMQDDIVAVAPD----HPATTEKRCAALQLADPRYFNSGMLYINIPRWQEAKITE 184
            L  +D+      V  D     P   + R + L L  PRYFN+GMLYINIP W++ K++E
Sbjct: 138 ELMGMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKHPRYFNAGMLYINIPEWEKNKVSE 197

Query: 185 QVMQVLLDNTQTLRFIDQDVLNIVLNGRARYISRNYNYLYDMVHDLKSNETRMRPVGKAV 244
             ++ L+ N   L F DQD LNIVL+G+ARYI   +NY+Y M+ DLK     M PVG A 
Sbjct: 198 AAIRALVSNPDKLTFNDQDALNIVLDGQARYIPVKWNYIYSMIADLKQGRQTMSPVGDAR 257

Query: 245 IIHFAGPIKPWSAWTGHEATRLFAQYHQLSPWRQMPADEAPTNSTERRMHSRFLYRQGKY 304
           IIHFAG +KPW  W+GH A  L+ +YH LS W  +P D AP N  E R+++RFL ++G Y
Sbjct: 258 IIHFAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKRGDY 317

Query: 305 LQSLVWFVRYLRKHSRKR 322
              L W  R+L    R++
Sbjct: 318 ACGLYWNARFLLTALRRK 335


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 913,220
Number of extensions: 34471
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)