BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0029.p
         (370 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS heptosyltransfe...   529   e-151

>gi|300312862|ref|YP_003776954.1| ADP-heptose:LPS
           heptosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 367

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/367 (69%), Positives = 296/367 (80%), Gaps = 2/367 (0%)

Query: 5   MPTQ--LIPQDLLRSSDRILFVAHLAIGDFTYLQNFFKAFAAQNPQLKIDLWVDEVRRTG 62
           M TQ  LIP DLL+ SD+ILF+AHLA+GDFTYLQNFFKAFAAQ+P LK+ LWVDEVRRT 
Sbjct: 1   MSTQATLIPADLLKKSDKILFIAHLALGDFTYLQNFFKAFAAQHPHLKVHLWVDEVRRTA 60

Query: 63  DASKWEFLRKYSLYDWLAACPFFNKVYTRTYSPALLEESVAEAQAAHYPIVVSLATLRPH 122
           D+S+W  L+KY+LYDW AACPFF KVYTRTYSPAL  +S+ EA+A HYPIVVSLATLRPH
Sbjct: 61  DSSQWPHLQKYALYDWTAACPFFAKVYTRTYSPALYRDSIEEARAEHYPIVVSLATLRPH 120

Query: 123 QYAALARRLSPQGMVIGMQDRIRFYQPHHVLAYRKLDAAIPRYRAADGQHHITDVYAHWF 182
            YA LAR +SP+G V+GM+ ++   QPHH+LAYRKLDA +P YR++  +HHI+DVYAHWF
Sbjct: 121 LYAGLAREISPEGWVVGMKKKVSLLQPHHLLAYRKLDAVMPPYRSSQPEHHISDVYAHWF 180

Query: 183 RQLSGLEVDAAARMPFVEIPQQWREEAQQRLASWGFDDGQRKLVVINPYAKTKKRCWSLA 242
           RQLSGLEV   AR PFV+IP QWR+ AQ +LA+W F     KLV INPYAKT+KRCW L 
Sbjct: 181 RQLSGLEVTGQARFPFVDIPPQWRQYAQDQLAAWQFAPRTGKLVFINPYAKTRKRCWPLE 240

Query: 243 QVGQLIKAMQALPQWAQSDFVINAVPQELPHARQEIARQQLERTVLFSAEENFFQLPALL 302
            V  LI+AMQ    W  +  ++NAVPQEL HAR+ I R  L+ T LFSAEENFFQLPA+L
Sbjct: 241 HVADLIQAMQQREGWQDARVIVNAVPQELAHAREVIGRYGLQGTELFSAEENFFQLPAML 300

Query: 303 EQADLIISVETAVMHLANAVHVPVIALMRQKNPEWVPYDAAHSTVVTTQARRDWVERISV 362
              DLIISVETAVMHLANAVHVPVIALMRQKNPEWVP D AHSTV+T   RRDWV+ +SV
Sbjct: 301 AACDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAVSV 360

Query: 363 EQVLKAI 369
           EQV+KAI
Sbjct: 361 EQVMKAI 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,176,015
Number of extensions: 48866
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,207,925
Effective search space: 341842775
Effective search space used: 341842775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)