BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0025.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312858|ref|YP_003776950.1| inhibition of septum formation ...   394   e-111
gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum form...    71   6e-14

>gi|300312858|ref|YP_003776950.1| inhibition of septum formation
           nucleotide-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 204

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/204 (94%), Positives = 202/204 (99%)

Query: 1   MKQADHKIYLASKSPRRRELLRQIGIDFELMLSDKEVDESVLPGEAPLDYVARVTRAKLD 60
           MK AD KIYLASKSPRRRELLRQIGIDFEL+LSDKEVDESVLPGEAP+DYVARVTRAKLD
Sbjct: 1   MKPADQKIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPMDYVARVTRAKLD 60

Query: 61  SAQQTMILRQLPHRPLLAADTTVVVDDLILGKPADHDEAVRMITLLSGRTHQVLTSVAVG 120
           SAQQTMILRQLPHRPLL+ADTTVVVDDLILGKPADHDEAVRMI+LLSGRTHQVLTSVAVG
Sbjct: 61  SAQQTMILRQLPHRPLLSADTTVVVDDLILGKPADHDEAVRMISLLSGRTHQVLTSVAVG 120

Query: 121 VTLGVETEVWQIVQQSDVSFAPLTEEAIAAYCNTVEPYDKAGAYGIQGLASVFISHIVGS 180
           VT+GVET+VWQIVQQSDVSFAPLTE+AIAAYC+TVEPYDKAGAYGIQGLASVFIS+IVGS
Sbjct: 121 VTMGVETQVWQIVQQSDVSFAPLTEQAIAAYCHTVEPYDKAGAYGIQGLASVFISNIVGS 180

Query: 181 HSGIMGLPLFETAQLLQQAGVRIL 204
           HSGIMGLPLFETAQLLQQAGVRIL
Sbjct: 181 HSGIMGLPLFETAQLLQQAGVRIL 204


>gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum
           formation inhibitor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 226

 Score = 71.2 bits (173), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 14/200 (7%)

Query: 7   KIYLASKSPRRRELLRQIGIDFELMLSDKEVDESVLPGEAPLDYVARVTRAKLDSAQQTM 66
           ++ L S S  R++LL ++G+ FE M  D  +DE+   GE P       T  +L  A+   
Sbjct: 27  RLILGSSSVYRKQLLERLGLPFETMTPD--IDETPQAGETP-----EATALRLARAKAAA 79

Query: 67  ILRQLPHRPLLAADTTVVVDDLILGKPADHDEAVRMITLLSGRTHQVLTSVAVGVTLGVE 126
           I  +     ++ +D    +D   +GKP +H  A+R + ++ GR  +V+   A+ +  G  
Sbjct: 80  IAARAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMRGR--EVIFHTALCLWDGRR 137

Query: 127 TEVWQIVQ----QSDVSFAPLTEEAIAAYCNTVEPYDKAGAYGIQGLASVFISHIVGSH- 181
           T+  Q  Q    Q+ V    L++  + AY +  +PYD AG+   +GL    +  I     
Sbjct: 138 TDAAQAAQLCNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAKNEGLGIAILESIRSDDP 197

Query: 182 SGIMGLPLFETAQLLQQAGV 201
           + + GLPL     +L+QAGV
Sbjct: 198 TALTGLPLIALTTMLRQAGV 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 617,291
Number of extensions: 24995
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)