BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0021.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312854|ref|YP_003776946.1| coproporphyrinogen III oxidase ...   610   e-176

>gi|300312854|ref|YP_003776946.1| coproporphyrinogen III oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  610 bits (1573), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/306 (95%), Positives = 300/306 (98%)

Query: 1   VTIHSNAATNTAAVKAYLQDLQQRIVAALEAADGKTFLSDSWERPEGGGGTSRLLEEGNL 60
           VT HSNA+TNTAAVKAYLQDLQQRIVAALEAADGK+FLSDSWERPEGGGGTSRLLEEGNL
Sbjct: 19  VTTHSNASTNTAAVKAYLQDLQQRIVAALEAADGKSFLSDSWERPEGGGGTSRLLEEGNL 78

Query: 61  LERGGVGFSHVMGKNLPPSAAANRPQLAGRAWEAMGVSLVLHPRNPYVPTVHMNVRFFTT 120
           LERGGVGFSHVMGKNLPPSAAANRP LAGRAWEAMGVSLVLHPRNPYVPTVHMNVRFFTT
Sbjct: 79  LERGGVGFSHVMGKNLPPSAAANRPHLAGRAWEAMGVSLVLHPRNPYVPTVHMNVRFFTT 138

Query: 121 HAEGEEAVWWFGGGMDLTPYYGVKEDAVHFHRTCRDALQPYGEDLYPRFKKWCDDYFYLK 180
           HAEGEEAVWWFGGGMDLTPYYGV++DA HFHRTCRDALQPYG++LYPRFK WCDDYFYLK
Sbjct: 139 HAEGEEAVWWFGGGMDLTPYYGVEDDARHFHRTCRDALQPYGDELYPRFKTWCDDYFYLK 198

Query: 181 HRKEPRGVGGIFFDDFNALPFEQAFALQRSVGDAFLDAYLPIVAARREMPYGERERDFQA 240
           HRKEPRGVGGIFFDDFNALPFEQAFA+QRSVGDAFL AYLPIVAARR+ PYGERERDFQA
Sbjct: 199 HRKEPRGVGGIFFDDFNALPFEQAFAMQRSVGDAFLAAYLPIVAARRDTPYGERERDFQA 258

Query: 241 YRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPGSPEAALYSDFL 300
           YRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPGSPEAALYSDFL
Sbjct: 259 YRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPGSPEAALYSDFL 318

Query: 301 VHKEWL 306
           VHKEWL
Sbjct: 319 VHKEWL 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,059,389
Number of extensions: 46085
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)