BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0015.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312849|ref|YP_003776941.1| drug/metabolite transporter (DM...   554   e-159

>gi|300312849|ref|YP_003776941.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  554 bits (1428), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/303 (93%), Positives = 290/303 (95%), Gaps = 1/303 (0%)

Query: 4   AHTPVHSTPRQAFLGGLLLAIIGAIFFSAKAIVAKLMYRYQVDAVMVITLRMLFSFPMFA 63
           A TP H TPRQAFLGGLLLAI+GA+FFSAKAIVAKLMYRY VDAVMVITLRM+FSFPMFA
Sbjct: 3   AATP-HPTPRQAFLGGLLLAIVGAVFFSAKAIVAKLMYRYHVDAVMVITLRMVFSFPMFA 61

Query: 64  AVALWKARTQPPLARADVLRIVVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVM 123
           AVALWKARTQPPL R D  RIVVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVM
Sbjct: 62  AVALWKARTQPPLGRGDGWRIVVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVM 121

Query: 124 LIAFFFFKRKVGWIEWAALLVSYFGTVLVLQHDLHTGGSNVILGSALVLGSALSYSIYLI 183
           LIAFFFFKRK GWIEWAALLVSYFGTVLVLQHDLH GGS+VILGSALVLGSA SYSIYLI
Sbjct: 122 LIAFFFFKRKFGWIEWAALLVSYFGTVLVLQHDLHVGGSDVILGSALVLGSAFSYSIYLI 181

Query: 184 SSGELVRRVGAVRLVAYAMCVSSVACLIQFFILRAPADLVTQVAPVYQLSLFNAVFCTVL 243
           SSGELVRRVGAVRLVAYAMCVSSVAC+IQFF+LRAPADL+TQVAPVYQLSLFNAVFCTVL
Sbjct: 182 SSGELVRRVGAVRLVAYAMCVSSVACVIQFFVLRAPADLLTQVAPVYQLSLFNAVFCTVL 241

Query: 244 PVFLTMVAVARIGAPTAAQAGLVGPVSTLFMGAVLLDEPITGIQLAGTALVLAGMWLLSR 303
           PVFLTMVAVARIGAPTAAQAGLVGPVSTLFMGAVLLDEPIT +QL GTALVLAGMWLLSR
Sbjct: 242 PVFLTMVAVARIGAPTAAQAGLVGPVSTLFMGAVLLDEPITALQLVGTALVLAGMWLLSR 301

Query: 304 KKR 306
           KKR
Sbjct: 302 KKR 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,657
Number of extensions: 28778
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 6
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 130 (54.7 bits)