BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0008.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312846|ref|YP_003776938.1| lipoprotein [Herbaspirillum ser...   374   e-105

>gi|300312846|ref|YP_003776938.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/217 (83%), Positives = 201/217 (92%)

Query: 1   MKRWLYPLLAAASLLLSGCASVIESNVTSFHAWSPDYNQRAYAFAPAKEQENDLQYQNYA 60
           MKRW+YPLLA A+LLLSGCA+VI++NVTSFHAW+P YN + YAFAP KEQEN+L+YQNYA
Sbjct: 64  MKRWIYPLLALATLLLSGCATVIDNNVTSFHAWTPSYNDKPYAFAPTKEQENNLEYQNYA 123

Query: 61  GLIRQELQFLGFTEARDLKSAQLQVSFGYGMNTEQVVVSRPAYDPFFYGPGPGWGRFGPR 120
            LIRQELQFLGFTEA++ + AQLQVSF YGMNTEQVVV+RPAYDPFFYGP PGWGRFGPR
Sbjct: 124 SLIRQELQFLGFTEAKEARQAQLQVSFSYGMNTEQVVVTRPAYDPFFYGPAPGWGRFGPR 183

Query: 121 PFGFYGPYGPFYDPFWYGGPMQTTSYPVFLRRLQIGISQASDGKKLFDVVVDSEGQRAGL 180
           PFGFYGPYGPFYDPFWYGGPMQ+TSYPVFLRRLQIGI++A  GKKLFDVVVDSEG RAGL
Sbjct: 184 PFGFYGPYGPFYDPFWYGGPMQSTSYPVFLRRLQIGITEAGGGKKLFDVVVDSEGSRAGL 243

Query: 181 TAAMPAMVRAAFEDFPGPSGVTRHIRIKVDKNGQPEN 217
            AAMPAMVRAAF+DFPGPSGVTR +RIKVDK+GQP +
Sbjct: 244 AAAMPAMVRAAFDDFPGPSGVTRQVRIKVDKDGQPMD 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 506,571
Number of extensions: 16106
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)