BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0006.p
         (898 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312845|ref|YP_003776937.1| aminopeptidase N [Herbaspirillu...  1762   0.0  

>gi|300312845|ref|YP_003776937.1| aminopeptidase N [Herbaspirillum
           seropedicae SmR1]
          Length = 898

 Score = 1762 bits (4564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 850/898 (94%), Positives = 879/898 (97%)

Query: 1   MRTDTPQTIYRKDYAAPNYLADTVEMGFDLDPADTHVATRITLTRNPAAKGRDLILFGEE 60
           MRTDTPQTIYRKDYAAP+YLADTVEMGFDLDP+DT VATRIT+TRNPAAK RDL+LFGEE
Sbjct: 1   MRTDTPQTIYRKDYAAPHYLADTVEMGFDLDPSDTRVATRITMTRNPAAKSRDLVLFGEE 60

Query: 61  LELVALRLNGKTLSQAKGDFRIAGGVLTIPAAPAKVTLEIETLVHPDRNTSLMGLYVSNG 120
           LELVALRLNGK L+QAKGDFRIAGGVLTIPAAPAKV LEIETLVHPDRNTSLMGLYVSNG
Sbjct: 61  LELVALRLNGKLLTQAKGDFRIAGGVLTIPAAPAKVVLEIETLVHPDRNTSLMGLYVSNG 120

Query: 121 NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEGELPDGRHYA 180
           NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEG+LPDGRHYA
Sbjct: 121 NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEGDLPDGRHYA 180

Query: 181 KWEDPFKKPSYLFALVAGQLVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAMESLKNSI 240
           KWEDPFKKPSYLFALVAG LVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAM+SLKNSI
Sbjct: 181 KWEDPFKKPSYLFALVAGNLVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAMDSLKNSI 240

Query: 241 TWDVERFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV 300
           TWDV+RFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV
Sbjct: 241 TWDVQRFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV 300

Query: 301 VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ 360
           VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ
Sbjct: 301 VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ 360

Query: 361 AQFPEDAGPMAHPVRPDSFVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFKR 420
           AQFPEDAGPMAHPVRPDS+VEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYF+R
Sbjct: 361 AQFPEDAGPMAHPVRPDSYVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFER 420

Query: 421 HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTPLVQASADYDAKRKTLTLTLEQSCP 480
           HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTP VQAS DYDAKRKTLTLTLEQSCP
Sbjct: 421 HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTPQVQASVDYDAKRKTLTLTLEQSCP 480

Query: 481 ATPGQKKKQPFHIPVAVGLLDAQGRDLALTLQGEKKAGATTRVLELTKAKQSFTFINVDE 540
            TPGQKKKQPFHIPVAVGLLDAQGRDLALTL+GEKKAG TTRVLELTKAKQSF F+NV++
Sbjct: 481 PTPGQKKKQPFHIPVAVGLLDAQGRDLALTLEGEKKAGPTTRVLELTKAKQSFRFVNVEQ 540

Query: 541 KPVPSLLRGFSAPVVLQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQAA 600
           KPVPSLLRGFSAPV+LQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQAA
Sbjct: 541 KPVPSLLRGFSAPVLLQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQAA 600

Query: 601 RQSGHVVAVDTVLNNIEHDGALADALRATLKDESLDPAFRELVLTLPSETMIAEQMEVID 660
           RQSGHVV+VDTVLNN+EHDGALA+ALRATL+DE+LDPAFRELVLTLPSETMIAEQME+ID
Sbjct: 601 RQSGHVVSVDTVLNNLEHDGALANALRATLRDEALDPAFRELVLTLPSETMIAEQMEIID 660

Query: 661 PHAIHVARQFLRRSLARELRDDLLAVYHAHQTPGAYSPDAASAGHRALKNVALSYLAELD 720
           PHAIHVARQFLRRSLARELR+DLLA YHA+QTPG YSPDAASAG RALKNVALSYLAELD
Sbjct: 661 PHAIHVARQFLRRSLARELREDLLAAYHANQTPGDYSPDAASAGRRALKNVALSYLAELD 720

Query: 721 DEEAMALAQQQDQDANNMTDRLAALSAVLNSAAPGKSEALQRFYAEFEQEALVIDKWFTL 780
           DE+AM LAQQQDQ ANNMTDRLAALSA+LNSAAPGKSEALQRFYAEFEQEALVIDKWFTL
Sbjct: 721 DEQAMTLAQQQDQQANNMTDRLAALSAILNSAAPGKSEALQRFYAEFEQEALVIDKWFTL 780

Query: 781 QATARNADVNTVRTLTEHPAFTLKNPNRARSLIFSFCNGNPSAFHALDGNGYAFWAEQVI 840
           QATARNADVNTVRTL EHPAFTLKNPNRARSLIFSFCNGNPSAFHA DGNGY+FWAEQVI
Sbjct: 781 QATARNADVNTVRTLAEHPAFTLKNPNRARSLIFSFCNGNPSAFHAPDGNGYSFWAEQVI 840

Query: 841 ALNGSNPQVAARLARSLDRWRKYTPALQEKMRLALQQVAATPKLSRDVAEVITKALAD 898
           ALN SNPQVAARLARSLDRWRKY+PALQEKMRLALQQVAA PKLSRDVAEV+TKALA+
Sbjct: 841 ALNASNPQVAARLARSLDRWRKYSPALQEKMRLALQQVAAAPKLSRDVAEVVTKALAN 898


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,707,867
Number of extensions: 113880
Number of successful extensions: 340
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 1
Length of query: 898
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 804
Effective length of database: 1,174,780
Effective search space: 944523120
Effective search space used: 944523120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)